Publications - DTU Biosustain

Harnessing metabolic plasticity in CHO cells for enhanced perfusion cultivation

Nöbel, Matthias ; Barry, Craig ; MacDonald, Michael A. ; Baker, Kym ; Shave, Evan ; Mahler, Stephen ; Munro, Trent ; Martínez, Verónica S. ; Nielsen, Lars K. ; Marcellin, Esteban
in: Biotechnology and Bioengineering

Type: Journal article (Peer reviewed)

Status: Accepted/In press | Year: 2024 | DOI: https://doi.org/10.1002/bit.28613

LooplessFluxSampler

Saa, Pedro A. ; Zapararte, Sebastian ; Drovandi, Christopher C. ; Nielsen, Lars K.
in: BMC Bioinformatics, vol: 25, issue: 1

Type: Journal article (Peer reviewed)

Status: Published | Year: 2024 | DOI: https://doi.org/10.1186/s12859-023-05616-2

Middle and Late Holocene relative sea level changes and coastal development at Rugård, Denmark

Riis, Marie Holst ; Sander, Lasse ; Nielsen, Lars ; Buylaert, Jan‐Pieter ; Challier, Amélie Juliette Marie ; Larsen, Nicolaj Krog
in: Boreas

Type: Journal article (Peer reviewed)

Status: Accepted/In press | Year: 2024 | DOI: https://doi.org/10.1111/bor.12642

Shu: Visualization of high dimensional biological pathways

Carrasco Muriel, Jorge ; Cowie, Nicholas ; Taylor Parkins, Shannara ; Mansouvar, Marjan ; Groves, Teddy ; Nielsen, Lars Keld
in: Bioinformatics

Type: Journal article (Peer reviewed)

Status: Accepted/In press | Year: 2024 | DOI: https://doi.org/10.1093/bioinformatics/btae140

A Broad-Host-Range Expression Platform To Facilitate Chassis Screening

Mol, Viviënne ; De Almeida Will, Ácil ; Falkenberg, Kristoffer Bach ; Pogrebnyakov, Ivan ; Beck, Charlotte ; Skøttrup, Anna Lyhne ; Nielsen, Alex Toftgaard ; Ingemann Jensen, Sheila
part of: The Danish Microbiological Society Annual Congress 2023, pages: 85-85, 2023
Presented at: The Danish Microbiological Society Annual Congress 2023

Type: Conference abstract in proceedings (Peer reviewed)

Status: Published | Year: 2023

A kinetic description of the Warburg effect in CHO cells

Cowie, Nicholas Luke

Type: Ph.D. thesis

Status: Published | Year: 2023

A Multi-Level Systems Biology Analysis of Aldrin’s Metabolic Effects on Prostate Cancer Cells

Bedia, Carmen ; Dalmau, Nuria ; Nielsen, Lars K. ; Tauler, Romà ; Marín de Mas, Igor
in: Proteomes, vol: 11, issue: 2

Type: Journal article (Peer reviewed)

Status: Published | Year: 2023 | DOI: https://doi.org/10.3390/proteomes11020011

An automated workflow for multi-omics screening of microbial model organisms

Donati, Stefano ; Mattanovich, Matthias ; Hjort, Pernille ; Baallal Jacobsen, Simo Abdessamad ; Blomquist, Sarah Dina ; Mangaard, Drude ; Gurdo, Nicolas ; Pacheco Pastor, Felix ; Maury, Jerome ; Hanke, René ; Herrgård, Markus J ; Wulff, Tune ; Jakociunas, Tadas ; Nielsen, Lars Keld ; McCloskey, Douglas
in: n p j Systems Biology and Applications, vol: 9

Type: Journal article (Peer reviewed)

Status: Published | Year: 2023 | DOI: https://doi.org/10.1101/2022.07.18.500181

A Protocol for the Automatic Construction of Highly Curated Genome-Scale Models of Human Metabolism

Marin de Mas, Igor ; Herand, Helena ; Carrasco, Jorge ; Nielsen, Lars K. ; Johansson, Pär I.
in: Bioengineering, vol: 10, issue: 5

Type: Journal article (Peer reviewed)

Status: Published | Year: 2023 | DOI: https://doi.org/10.3390/bioengineering10050576

Biogas upgrading using Clostridium autoethanogenum for value-added products

Heffernan, James K. ; Lai, Chun Yu ; Gonzalez-Garcia, R. Axayacatl ; Keld Nielsen, Lars ; Guo, Jianhua ; Marcellin, Esteban
in: Chemical Engineering Journal, vol: 452

Type: Journal article (Peer reviewed)

Status: Published | Year: 2023 | DOI: https://doi.org/10.1016/j.cej.2022.138950