Publications

Adaptive laboratory evolution reveals general and specific chemical tolerance mechanisms and enhances biochemical production

Lennen, Rebecca M. ; Jensen, Kristian ; Mohammed, Elsayed T. ; Malla, Sailesh ; Börner, Rosa A. ; Chekina, Ksenia ; Özdemir, Emre ; Bonde, Ida ; Koza, Anna ; Maury, Jérôme ; Pedersen, Lasse E. ; Schöning, Lars Y. ; Sonnenschein, Nikolaus ; Palsson, Bernhard O. ; Sommer, Morten O. A. ; Feist, Adam M. ; Nielsen, Alex T. ; Herrgård, Markus J.
in: bioRxiv

Type: Journal article

Status: Submitted | Year: 2023 | DOI: https://doi.org/10.1101/634105

An automated workflow for multi-omics screening of microbial model organisms

Donati, Stefano ; Mattanovich, Matthias ; Hjort, Pernille ; Baallal Jacobsen, Simo Abdessamad ; Blomquist, Sarah Dina ; Mangaard, Drude ; Gurdo, Nicolas ; Pastor, Felix Pacheco ; Maury, Jerome ; Hanke, Rene ; Herrgård, Markus J ; Wulff, Tune ; Jakociunas, Tadas ; Nielsen, Lars Keld ; McCloskey, Douglas
in: bioRxiv

Type: Journal article (Peer reviewed)

Status: Submitted | Year: 2023 | DOI: https://doi.org/10.1101/2022.07.18.500181

Biogas upgrading using Clostridium autoethanogenum for value-added products

Heffernan, James K. ; Lai, Chun Yu ; Gonzalez-Garcia, R. Axayacatl ; Keld Nielsen, Lars ; Guo, Jianhua ; Marcellin, Esteban
in: Chemical Engineering Journal, vol: 452

Type: Journal article (Peer reviewed)

Status: Published | Year: 2023 | DOI: https://doi.org/10.1016/j.cej.2022.138950

Challenges and opportunities in bringing nonbiological atoms to life with synthetic metabolism

Haas, Robert ; Nikel, Pablo I
in: Trends in Biotechnology

Type: Journal article (Peer reviewed)

Status: Accepted/In press | Year: 2023 | DOI: https://doi.org/10.1016/j.tibtech.2022.06.004

ClusterCAD 2.0: an updated computational platform for chimeric type I polyketide synthase and nonribosomal peptide synthetase design

Tao, Xavier B. ; LaFrance, Sarah ; Xing, Yifei ; Nava, Alberto A. ; Martin, Hector Garcia ; Keasling, Jay D. ; Backman, Tyler W. H.
in: Nucleic Acids Research, vol: 51, issue: D1

Type: Journal article (Peer reviewed)

Status: Published | Year: 2023 | DOI: https://doi.org/10.1093/nar/gkac1075

Combining genetic engineering and bioprocess concepts for improved phenylpropanoid production

Virklund, Alexander ; Jensen, Sheila I. ; Nielsen, Alex T. ; Woodley, John M.
in: Biotechnology and Bioengineering

Type: Journal article (Peer reviewed)

Status: Accepted/In press | Year: 2023 | DOI: https://doi.org/10.1002/bit.28292

Embryogenesis of a calanoid copepod analyzed by transcriptomics

Acebal, Miguel Cifuentes ; Dalgaard, Louise Torp ; Jørgensen, Tue Sparholt ; Hansen, Benni Winding
in: Comparative Biochemistry and Physiology - Part D: Genomics and Proteomics, vol: 45

Type: Journal article (Peer reviewed)

Status: Published | Year: 2023 | DOI: https://doi.org/10.1016/j.cbd.2022.101054

Engineering of Pseudomonas putida for accelerated co-utilization of glucose and cellobiose yields aerobic overproduction of pyruvate explained by an upgraded metabolic model

Bujdoš, Dalimil ; Popelářová, Barbora ; Volke, Daniel C. ; Nikel, Pablo I. ; Sonnenschein, Nikolaus ; Dvořák, Pavel
in: Metabolic Engineering, vol: 75, pages: 29-46

Type: Journal article (Peer reviewed)

Status: Published | Year: 2023 | DOI: https://doi.org/10.1016/j.ymben.2022.10.011