Publications

Publikationer rss feed

2024
  PDF

Development of Corynebacterium glutamicum as a monoterpene production platform

Luckie, Bridget A. ; Kashyap, Meera ; Pearson, Allison N. ; Chen, Yan ; Liu, Yuzhong ; Valencia, Luis E. ; Romero, Alexander Carrillo ; Hudson, Graham A. ; Tao, Xavier B. ; Wu, Bryan ; Petzold, Christopher J. ; Keasling, Jay D.
in: Metabolic Engineering, vol: 81, pages: 110-122

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2024     |    DOI: https://doi.org/10.1016/j.ymben.2023.11.009

  PDF

Differences in interaction of graphene/graphene oxide with bacterial and mammalian cell membranes

Lanai, Victor ; Chen, Yanyan ; Naumovska, Elena ; Pandit, Santosh ; Schröder, Elsebeth ; Mijakovic, Ivan ; Rahimi, Shadi
in: Nanoscale

Type: Journal article (Peer reviewed)

Status: Accepted/In press     |    Year: 2024     |    DOI: https://doi.org/10.1039/d3nr05354g

 

Dilarmycins A-C, Calcium-Dependent Lipopeptide Antibiotics with a Non-canonical Ca(2+)-Binding Motif

Fernández-Pastor, Ignacio ; Ortiz-López, Francisco Javier ; Oves-Costales, Daniel ; Martín, Jesús ; Sánchez, Pilar ; Melguizo, Ángeles ; Reyes Gonzalez, Fernando ; Weber, Tilmann ; Genilloud, Olga
in: Organic Letters, vol: 26, issue: 7, pages: 1343–1347

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2024     |    DOI: https://doi.org/10.1021/acs.orglett.3c04195

 

Discovery of a Biotin Synthase That Utilizes an Auxiliary 4Fe-5S Cluster for Sulfur Insertion

Lachowicz, Jake C. ; Lennox-Hvenekilde, David ; Myling-Petersen, Nils ; Salomonsen, Bo ; Verkleij, Gijs ; Acevedo-Rocha, Carlos G. ; Caddell, Ben ; Gronenberg, Luisa S. ; Almo, Steven C. ; Sommer, Morten O.A. ; Genee, Hans J. ; Grove, Tyler L.
in: Journal of the American Chemical Society, vol: 146, issue: 3, pages: 1860-1873

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2024     |    DOI: https://doi.org/10.1021/jacs.3c05481

  PDF

Discovery of nanobodies for the development of recombinant antivenoms

Burlet, Nick J. ; Ahmadi, Shirin ; Benard Valle, Melisa ; Thumtecho, Suthimon ; Ljungars, Anne ; Laustsen-Kiel, Andreas Hougaard
Presented at:
10th Alpbach Workshop on Affinity Proteomics

Type: Poster (Peer reviewed)

Status: Published     |    Year: 2024

  PDF

Early-stage economic and environmental impact assessment for optimized bioprocess development

Etit, Deniz ; Ögmundarson, Ólafur ; Zhang, Jie ; Krogh Jensen, Michael ; Sukumara, Sumesh
in: Bioresource Technology, vol: 391, Part B

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2024     |    DOI: https://doi.org/10.1016/j.biortech.2023.130005

  PDF

Edible mycelium bioengineered for enhanced nutritional value and sensory appeal using a modular synthetic biology toolkit

Maini Rekdal, Vayu ; van der Luijt, Casper R.B. ; Chen, Yan ; Kakumanu, Ramu ; Baidoo, Edward E.K. ; Petzold, Christopher J. ; Cruz-Morales, Pablo ; Keasling, Jay D.
in: Nature Communications, vol: 15, issue: 1

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2024     |    DOI: https://doi.org/10.1038/s41467-024-46314-8

 

Engineered phage with antibacterial CRISPR–Cas selectively reduce E. coli burden in mice

Gencay, Yilmaz Emre ; Jasinskytė, Džiuginta ; Robert, Camille ; Semsey, Szabolcs ; Martínez, Virginia ; Petersen, Anders Østergaard ; Brunner, Katja ; de Santiago Torio, Ana ; Salazar, Alex ; Turcu, Iszabela Cristiana ; Eriksen, Melissa Kviesgaard ; Koval, Lev ; Takos, Adam ; Pascal, Ricardo ; Schou, Thea Staffeldt ; Bayer, Lone ; Bryde, Tina ; Johansen, Katja Chandelle ; Bak, Emilie Glad ; Smrekar, Frenk ; Doyle, Timothy B. ; Satlin, Michael J. ; Gram, Aurelie ; Carvalho, Joana ; Jessen, Lene ; Hallström, Björn ; Hink, Jonas ; Damholt, Birgitte ; Troy, Alice ; Grove, Mette ; Clube, Jasper ; Grøndahl, Christian ; Haaber, Jakob Krause ; van der Helm, Eric ; Zdravkovic, Milan ; Sommer, Morten Otto Alexander
in: Nature Biotechnology

Type: Journal article (Peer reviewed)

Status: Accepted/In press     |    Year: 2024     |    DOI: https://doi.org/10.1038/s41587-023-01759-y

 

Engineering yeast for the de novo synthesis of jasmonates

Tang, Hongting ; Lin, Shumin ; Deng, Jiliang ; Keasling, Jay D. ; Luo, Xiaozhou
in: Nature Synthesis

Type: Journal article (Peer reviewed)

Status: Accepted/In press     |    Year: 2024     |    DOI: https://doi.org/10.1038/s44160-023-00429-w

 

Expanding the structural diversity of terpenes by synthetic biology approaches

Chen, Rong ; Wang, Ming ; Keasling, Jay D. ; Hu, Tianyuan ; Yin, Xiaopu
in: Trends in Biotechnology

Type: Review (Peer reviewed)

Status: Accepted/In press     |    Year: 2024     |    DOI: https://doi.org/10.1016/j.tibtech.2023.12.006

  PDF

Exploiting Genetic Interactions in Metabolic Engineering

Cachera, Paul Pierre-Yves Jean

Type: Ph.D. thesis

Status: Published     |    Year: 2024

  PDF

Exploring the microbial diversity of novel misos with metagenomics

Kothe, Caroline Isabel ; Rasmussen, Jacob Agerbo ; Mak, Sarah S.T. ; Gilbert, M. Thomas P. ; Evans, Joshua
in: Food Microbiology, vol: 117

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2024     |    DOI: https://doi.org/10.1016/j.fm.2023.104372

  PDF

Exploring the secretome of Corynebacterium glutamicum ATCC 13032

Balasubramanian, Suvasini ; Køhler, Julie Bonne ; Jers, Carsten ; Jensen, Peter Ruhdal ; Mijakovic, Ivan
in: Frontiers in Bioengineering and Biotechnology, vol: 12

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2024     |    DOI: https://doi.org/10.3389/fbioe.2024.1348184

  PDF

ExpoSeq: simplified analysis of high-throughput sequencing data from antibody discovery campaigns

Sørensen, Christoffer V. ; Hofmann, Nils ; Rawat, Puneet ; Sørensen, Frederik V. ; Ljungars, Anne ; Greiff, Victor ; Laustsen, Andreas H. ; Jenkins, Timothy P.
in: Bioinformatics Advances, vol: 4, issue: 1

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2024     |    DOI: https://doi.org/10.1093/bioadv/vbae020

  PDF

Foldy

Roberts, Jacob B. ; Nava, Alberto A. ; Pearson, Allison N. ; Incha, Matthew R. ; Valencia, Luis E. ; Ma, Melody ; Rao, Abhay ; Keasling, Jay D.
in: PLOS Computational Biology, vol: 20, issue: 2

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2024     |    DOI: https://doi.org/10.1371/journal.pcbi.1011171

 

Genetic dissection of the degradation pathways for the mycotoxin fusaric acid in Burkholderia ambifaria T16

Vinacour, Matias ; Moiana, Mauro ; Forné, Ignasi ; Jung, Kirsten ; Bertea, Micaela ; Valdayo, Patricia M. Calero ; Nikel, Pablo I. ; Imhof, Axel ; Palumbo, Miranda C. ; Fernández Do Porto, Dario ; Ruiz, Jimena A.
in: Applied and Environmental Microbiology

Type: Journal article (Peer reviewed)

Status: Accepted/In press     |    Year: 2024     |    DOI: https://doi.org/10.1128/aem.00630-23

  PDF

Genome-wide host-pathway interactions affecting cis-cis-muconic acid production in yeast

Cachera, Paul ; Kurt, Nikolaj Can ; Røpke, Andreas ; Strucko, Tomas ; Mortensen, Uffe H. ; Jensen, Michael K.
in: Metabolic Engineering, vol: 83, pages: 75-85

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2024     |    DOI: https://doi.org/10.1016/j.ymben.2024.02.015

 

Glucuronan lyases from family PL7 use a Tyr/Tyr syn β-elimination catalytic mechanism for glucuronan breakdown

Vuillemin, Marlene ; Pilgaard, Bo ; Kiehn, Emma ; Fredslund, Folmer ; Welner, Ditte H. ; Meyer, Anne S. ; Aachmann, Finn L. ; Wilkens, Casper
in: Chemical Communications, vol: 60, issue: 4, pages: 440-443

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2024     |    DOI: https://doi.org/10.1039/d3cc04256a

  PDF

“Graphene nanospikes exert bactericidal effect through mechanical damage and oxidative stress”

Chen, Yanyan ; Pandit, Santosh ; Rahimi, Shadi ; Mijakovic, Ivan
in: Carbon, vol: 218

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2024     |    DOI: https://doi.org/10.1016/j.carbon.2023.118740

  PDF

Halomonas citrativorans sp. nov., Halomonas casei sp. nov. and Halomonas colorata sp. nov., isolated from French cheese rinds

Kothe, Caroline Isabel ; Monnet, Christophe ; Irlinger, Françoise ; Virsolvy, Mathieu ; Frühling, Anja ; Neumannschaal, Meina ; Wolf, Jacqueline ; Renault, Pierre
in: International Journal of Systematic and Evolutionary Microbiology, vol: 74, issue: 1

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2024     |    DOI: https://doi.org/10.1099/ijsem.0.006234

 

Harnessing metabolic plasticity in CHO cells for enhanced perfusion cultivation

Nöbel, Matthias ; Barry, Craig ; MacDonald, Michael A. ; Baker, Kym ; Shave, Evan ; Mahler, Stephen ; Munro, Trent ; Martínez, Verónica S. ; Nielsen, Lars K. ; Marcellin, Esteban
in: Biotechnology and Bioengineering

Type: Journal article (Peer reviewed)

Status: Accepted/In press     |    Year: 2024     |    DOI: https://doi.org/10.1002/bit.28613

 

How many Mutations are needed to Evolve the Chemical Makeup of a Synthetic Cell?

Lefèvre-Morand, Rodrigue Yves Louis ; Nikel, Pablo Iván ; Acevedo-Rocha, Carlos G.
in: ChemBioChem

Type: Journal article (Peer reviewed)

Status: Accepted/In press     |    Year: 2024     |    DOI: https://doi.org/10.1002/cbic.202300829

 

Impact of Synergy Partner Cel7B on Cel7A Binding Rates: Insights from Single-Molecule Data

Nousi, Aimilia ; Molina, Gustavo Avelar ; Schiano-di-Cola, Corinna ; Sørensen, Trine Holst ; Borch, Kim ; Pedersen, Jonas N. ; Westh, Peter ; Marie, Rodolphe
in: Journal of Physical Chemistry Part B: Condensed Matter, Materials, Surfaces, Interfaces & Biophysical, vol: 128, issue: 3, pages: 635-647

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2024     |    DOI: https://doi.org/10.1021/acs.jpcb.3c05697