Publications

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2024
 

A chromosome-scale genome assembly of Rauvolfia tetraphylla facilitates the identification of the complete ajmaline biosynthetic pathway

Lezin, Enzo ; Carqueijeiro, Inês ; Cuello, Clément ; Durand, Mickael ; Jansen, Hans J ; Vergès, Valentin ; Williams, Caroline Birer ; Oudin, Audrey ; De Bernonville, Thomas Duge ; Petrignet, Julien ; Celton, Noémie ; St-Pierre, Benoit ; Papon, Nicolas ; Sun, Chao ; Dirks, Ron P ; O'Connor, Sarah Ellen ; Jensen, Michael Krogh ; Besseau, Sébastien ; Courdavault, Vincent
in: Plant Communications

Type: Journal article (Peer reviewed)

Status: Accepted/In press     |    Year: 2024     |    DOI: https://doi.org/10.1016/j.xplc.2023.100784

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A comparative study of protein structure prediction tools for challenging targets

Kalogeropoulos, Konstantinos ; Bohn, Markus-Frederik ; Jenkins, David E. ; Ledergerber, Jann ; Sørensen, Christoffer V. ; Hofmann, Nils ; Wade, Jack ; Fryer, Thomas ; Nguyen, Giang Thi Tuyet ; auf dem Keller, Ullrich ; Laustsen, Andreas H. ; Jenkins, Timothy P.
in: Toxicon, vol: 238

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2024     |    DOI: https://doi.org/10.1016/j.toxicon.2023.107559

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A comparative study of the performance of E. coli and K. phaffii for expressing α-cobratoxin

Damsbo, Anna ; Rimbault, Charlotte ; Burlet, Nick J. ; Vlamynck, Anneline ; Bisbo, Ida ; Belfakir, Selma B. ; Laustsen, Andreas H. ; Rivera-de-Torre, Esperanza
in: Toxicon, vol: 239

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2024     |    DOI: https://doi.org/10.1016/j.toxicon.2024.107613

 

A General and Convenient Peptide Self-Assembling Mechanism for Developing Supramolecular Versatile Nanomaterials Based on The Biosynthetic Hybrid Amyloid-Resilin Protein

Wu, Junjun ; Zhou, Lin ; Peng, Hu ; Wang, Zhaojun ; Wang, Zhaoshi ; Keasling, Jay D ; Liu, Shike ; Zhou, Guanghong ; Ding, Shijie ; Wang, Qiong ; Wang, Xuejian ; Chen, Xinxiu ; Lang, Yifei ; Xia, Mo ; Guan, Xin ; Dong, Mingsheng ; Zhou, Jingwen ; Chen, Jian
in: Advanced Materials, vol: 36, issue: 4

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2024     |    DOI: https://doi.org/10.1002/adma.202304364

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Anaerobic glucose uptake in Pseudomonas putida KT2440 in a bioelectrochemical system

Pause, Laura ; Weimer, Anna ; Wirth, Nicolas T. ; Nguyen, Anh Vu ; Lenz, Claudius ; Kohlstedt, Michael ; Wittmann, Christoph ; Nikel, Pablo I. ; Lai, Bin ; Krömer, Jens O.
in: Microbial Biotechnology

Type: Journal article (Peer reviewed)

Status: Accepted/In press     |    Year: 2024     |    DOI: https://doi.org/10.1111/1751-7915.14375

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Antibody-dependent enhancement of toxicity of myotoxin II from Bothrops asper

Sørensen, Christoffer V. ; Fernández, Julián ; Christina Adams, Anna ; Wildenauer, Helen H. K. ; Schoffelen, Sanne ; Ledsgaard, Line ; Pucca, Manuela B. ; Fiebig, Michael ; Cerni, Felipe A. ; Tulika, Tulika ; Voldborg, Bjørn G. ; Karatt-Vellat, Aneesh ; Morth, J. Preben ; Ljungars, Anne ; Grav, Lise M. ; Lomonte, Bruno ; Laustsen, Andreas H.
in: Nature Communications, vol: 15

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2024     |    DOI: https://doi.org/10.1038/s41467-023-42624-5

 

A Perspective on How Fibrinaloid Microclots and Platelet Pathology May be Applied in Clinical Investigations

Pretorius, Etheresia ; Kell, Douglas B.
in: Seminars in Thrombosis and Hemostasis

Type: Journal article (Peer reviewed)

Status: Accepted/In press     |    Year: 2024     |    DOI: https://doi.org/10.1055/s-0043-1774796

 

Are we under- or overreacting to climate change?

von Bülow, Catharina Wolff
in: Journal of Risk and Uncertainty

Type: Journal article (Peer reviewed)

Status: Accepted/In press     |    Year: 2024

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Automating relative and absolute environmental sustainability assessments of bio-based products

Meramo, Samir ; Pasutto, Eleonora ; Sukumara, Sumesh
in: Bioresource Technology, vol: 394

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2024     |    DOI: https://doi.org/10.1016/j.biortech.2023.130196

 

Carbene chemistry for unnatural biosynthesis

Huang, Jing ; Keasling, Jay D.
in: Science China Life Sciences

Type: Journal article (Peer reviewed)

Status: Accepted/In press     |    Year: 2024     |    DOI: https://doi.org/10.1007/s11427-023-2470-5

 

Characterization and Diversification of AraC/XylS Family Regulators Guided by Transposon Sequencing

Pearson, Allison N ; Incha, Matthew R ; Ho, Cindy N ; Schmidt, Matthias ; Roberts, Jacob B ; Nava, Alberto A ; Keasling, Jay D
in: ACS Synthetic Biology

Type: Journal article (Peer reviewed)

Status: Accepted/In press     |    Year: 2024     |    DOI: https://doi.org/10.1021/acssynbio.3c00441

 

Codon-tRNA Coadaptation Bias for Identifying Strong Native Promoters in Komagataella phaffii

Kastberg, Louise La Barbera ; Petrov, Mykhaylo S. ; Strucko, Tomas ; Jensen, Michael K. ; Workman, Christopher T.
in: ACS Synthetic Biology

Type: Journal article (Peer reviewed)

Status: Accepted/In press     |    Year: 2024     |    DOI: https://doi.org/10.1021/acssynbio.3c00567

 

Commensal production of a broad-spectrum and short-lived antimicrobial peptide polyene eliminates nasal Staphylococcus aureus

Torres Salazar, Benjamin O. ; Dema, Taulant ; Schilling, Nadine A. ; Janek, Daniela ; Bornikoel, Jan ; Berscheid, Anne ; Elsherbini, Ahmed M.A. ; Krauss, Sophia ; Jaag, Simon J. ; Lämmerhofer, Michael ; Li, Min ; Alqahtani, Norah ; Horsburgh, Malcolm J. ; Weber, Tilmann ; Beltrán-Beleña, José Manuel ; Brötz-Oesterhelt, Heike ; Grond, Stephanie ; Krismer, Bernhard ; Peschel, Andreas
in: Nature Microbiology, vol: 9, issue: 1, pages: 200-213

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2024     |    DOI: https://doi.org/10.1038/s41564-023-01544-2

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Development of Corynebacterium glutamicum as a monoterpene production platform

Luckie, Bridget A. ; Kashyap, Meera ; Pearson, Allison N. ; Chen, Yan ; Liu, Yuzhong ; Valencia, Luis E. ; Romero, Alexander Carrillo ; Hudson, Graham A. ; Tao, Xavier B. ; Wu, Bryan ; Petzold, Christopher J. ; Keasling, Jay D.
in: Metabolic Engineering, vol: 81, pages: 110-122

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2024     |    DOI: https://doi.org/10.1016/j.ymben.2023.11.009

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Differences in interaction of graphene/graphene oxide with bacterial and mammalian cell membranes

Lanai, Victor ; Chen, Yanyan ; Naumovska, Elena ; Pandit, Santosh ; Schröder, Elsebeth ; Mijakovic, Ivan ; Rahimi, Shadi
in: Nanoscale

Type: Journal article (Peer reviewed)

Status: Accepted/In press     |    Year: 2024     |    DOI: https://doi.org/10.1039/d3nr05354g

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Early-stage economic and environmental impact assessment for optimized bioprocess development

Etit, Deniz ; Ögmundarson, Ólafur ; Zhang, Jie ; Krogh Jensen, Michael ; Sukumara, Sumesh
in: Bioresource Technology, vol: 391, Part B

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2024     |    DOI: https://doi.org/10.1016/j.biortech.2023.130005

 

Engineered phage with antibacterial CRISPR–Cas selectively reduce E. coli burden in mice

Gencay, Yilmaz Emre ; Jasinskytė, Džiuginta ; Robert, Camille ; Semsey, Szabolcs ; Martínez, Virginia ; Petersen, Anders Østergaard ; Brunner, Katja ; de Santiago Torio, Ana ; Salazar, Alex ; Turcu, Iszabela Cristiana ; Eriksen, Melissa Kviesgaard ; Koval, Lev ; Takos, Adam ; Pascal, Ricardo ; Schou, Thea Staffeldt ; Bayer, Lone ; Bryde, Tina ; Johansen, Katja Chandelle ; Bak, Emilie Glad ; Smrekar, Frenk ; Doyle, Timothy B. ; Satlin, Michael J. ; Gram, Aurelie ; Carvalho, Joana ; Jessen, Lene ; Hallström, Björn ; Hink, Jonas ; Damholt, Birgitte ; Troy, Alice ; Grove, Mette ; Clube, Jasper ; Grøndahl, Christian ; Haaber, Jakob Krause ; van der Helm, Eric ; Zdravkovic, Milan ; Sommer, Morten Otto Alexander
in: Nature Biotechnology

Type: Journal article (Peer reviewed)

Status: Accepted/In press     |    Year: 2024     |    DOI: https://doi.org/10.1038/s41587-023-01759-y

 

Engineering yeast for the de novo synthesis of jasmonates

Tang, Hongting ; Lin, Shumin ; Deng, Jiliang ; Keasling, Jay D. ; Luo, Xiaozhou
in: Nature Synthesis

Type: Journal article (Peer reviewed)

Status: Accepted/In press     |    Year: 2024     |    DOI: https://doi.org/10.1038/s44160-023-00429-w

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Exploring the microbial diversity of novel misos with metagenomics

Kothe, Caroline Isabel ; Rasmussen, Jacob Agerbo ; Mak, Sarah S.T. ; Gilbert, M. Thomas P. ; Evans, Joshua
in: Food Microbiology, vol: 117

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2024     |    DOI: https://doi.org/10.1016/j.fm.2023.104372

 

Genetic dissection of the degradation pathways for the mycotoxin fusaric acid in Burkholderia ambifaria T16

Vinacour, Matias ; Moiana, Mauro ; Forné, Ignasi ; Jung, Kirsten ; Bertea, Micaela ; Valdayo, Patricia M. Calero ; Nikel, Pablo I. ; Imhof, Axel ; Palumbo, Miranda C. ; Fernández Do Porto, Dario ; Ruiz, Jimena A.
in: Applied and Environmental Microbiology

Type: Journal article (Peer reviewed)

Status: Accepted/In press     |    Year: 2024     |    DOI: https://doi.org/10.1128/aem.00630-23