Publications

A comprehensive and systemic review of ginseng-based nanomaterials

Balusamy, Sri Renukadevi ; Perumalsamy, Haribalan ; Huq, Md Amdadul ; Yoon, Tae Hyun ; Mijakovic, Ivan ; Thangavelu, Lakshmi ; Yang, Deok Chun ; Rahimi, Shadi
in: Medicinal Research Reviews

Type: Review (Peer reviewed)

Status: Accepted/In press | Year: 2023 | DOI: https://doi.org/10.1002/med.21953

Adaptive laboratory evolution of Bacillus subtilis to overcome toxicity of lignocellulosic hydrolysate derived from Distiller's dried grains with solubles (DDGS)

Driessen, Jasper L.S.P. ; Johnsen, Josefin ; Pogrebnyakov, Ivan ; Mohamed, Elsayed T.T. ; Mussatto, Solange I. ; Feist, Adam M. ; Jensen, Sheila I. ; Nielsen, Alex T.
in: Metabolic Engineering Communications, vol: 16

Type: Journal article (Peer reviewed)

Status: Published | Year: 2023 | DOI: https://doi.org/10.1016/j.mec.2023.e00223

Adaptive laboratory evolution reveals general and specific chemical tolerance mechanisms and enhances biochemical production

Lennen, Rebecca M. ; Jensen, Kristian ; Mohammed, Elsayed T. ; Malla, Sailesh ; Börner, Rosa A. ; Chekina, Ksenia ; Özdemir, Emre ; Bonde, Ida ; Koza, Anna ; Maury, Jérôme ; Pedersen, Lasse E. ; Schöning, Lars Y. ; Sonnenschein, Nikolaus ; Palsson, Bernhard O. ; Sommer, Morten O. A. ; Feist, Adam M. ; Nielsen, Alex T. ; Herrgård, Markus J.
in: bioRxiv

Type: Journal article

Status: Submitted | Year: 2023 | DOI: https://doi.org/10.1101/634105

Adaptive laboratory evolution to hypersaline conditions, of lactic acid bacteria isolated from seaweed

Papadopoulou, Eleftheria ; Rodriguez de Evgrafov, Mari Cristina ; Kalea, Argyro ; Tsapekos, Panagiotis ; Angelidaki, Irini
in: New Biotechnology

Type: Journal article (Peer reviewed)

Status: Published | Year: 2023 | DOI: https://doi.org/10.1016/j.nbt.2023.03.001

Alzheimer's Disease

Grobler, Corlia ; van Tongeren, Marvi ; Gettemans, Jan ; Kell, Douglas B. ; Pretorius, Etheresia
in: Journal of Alzheimer's Disease, vol: 91, issue: 1, pages: 43-70

Type: Review (Peer reviewed)

Status: Published | Year: 2023 | DOI: https://doi.org/10.3233/JAD-220720

An automated workflow for multi-omics screening of microbial model organisms

Donati, Stefano ; Mattanovich, Matthias ; Hjort, Pernille ; Baallal Jacobsen, Simo Abdessamad ; Blomquist, Sarah Dina ; Mangaard, Drude ; Gurdo, Nicolas ; Pacheco Pastor, Felix ; Maury, Jerome ; Hanke, René ; Herrgård, Markus J ; Wulff, Tune ; Jakociunas, Tadas ; Nielsen, Lars Keld ; McCloskey, Douglas
in: n p j Systems Biology and Applications, vol: 9

Type: Journal article (Peer reviewed)

Status: Published | Year: 2023 | DOI: https://doi.org/10.1101/2022.07.18.500181

An engineered Escherichia coli Nissle 1917 increase the production of indole lactic acid in the gut

Dimopoulou, Chrysoula ; Bongers, Mareike ; Pedersen, Mikael ; Bahl, Martin I. ; Sommer, Morten O. A. ; Laursen, Martin F. ; Licht, Tine R.
in: FEMS Microbiology Letters, vol: 370

Type: Journal article (Peer reviewed)

Status: Published | Year: 2023 | DOI: https://doi.org/10.1093/femsle/fnad027

Blin, Kai ; Shaw, Simon ; Augustijn, Hannah E ; Reitz, Zachary L ; Biermann, Friederike ; Alanjary, Mohammad ; Fetter, Artem ; Terlouw, Barbara R ; Metcalf, William W ; Helfrich, Eric J N ; van Wezel, Gilles P ; Medema, Marnix H ; Weber, Tilmann
in: Nucleic Acids Research

Type: Journal article (Peer reviewed)

Status: Accepted/In press | Year: 2023 | DOI: https://doi.org/10.1093/nar/gkad344

Are we under- or overreacting to climate change? Adaptation behavior in ambiguous risk with various levels of risk history

von Bülow, Catharina Wolff
in: Journal of Risk and Uncertainty

Type: Journal article (Peer reviewed)

Status: Accepted/In press | Year: 2023

A seven-transmembrane methyltransferase catalysing N-terminal histidine methylation of lytic polysaccharide monooxygenases

Batth, Tanveer S. ; Simonsen, Jonas L. ; Hernández-Rollán, Cristina ; Brander, Søren ; Morth, Jens Preben ; Johansen, Katja S. ; Nørholm, Morten H. H. ; Hoof, Jakob B. ; Olsen, Jesper V.
in: Nature Communications, vol: 14

Type: Journal article (Peer reviewed)

Status: Published | Year: 2023 | DOI: https://doi.org/10.1038/s41467-023-39875-7

Assessing developability early in the discovery process for novel biologics

Fernández-Quintero, Monica L. ; Ljungars, Anne ; Waibl, Franz ; Greiff, Victor ; Andersen, Jan Terje ; Gjølberg, Torelif T. ; Jenkins, Timothy P. ; Voldborg, Bjørn Gunnar ; Grav, Lise Marie ; Kumar, Sandeep ; Georges, Guy ; Kettenberger, Hubert ; Liedl, Klaus R. ; Tessier, Peter M. ; McCafferty, John ; Laustsen, Andreas H.
in: mAbs, vol: 15, issue: 1

Type: Review (Peer reviewed)

Status: Published | Year: 2023 | DOI: https://doi.org/10.1080/19420862.2023.2171248

Automating the design-build-test-learn cycle towards next-generation bacterial cell factories

Gurdo, Nicolás ; Volke, Daniel C. ; McCloskey, Douglas ; Nikel, Pablo Iván
in: New Biotechnology

Type: Journal article (Peer reviewed)

Status: Accepted/In press | Year: 2023 | DOI: https://doi.org/10.1016/j.nbt.2023.01.002

Biocontainment strategies for in vivo applications of Saccharomyces boulardii

Hedin, Karl Alex ; Kruse, Vibeke ; Vazquez-Uribe, Ruben ; Sommer, Morten Otto Alexander
in: Frontiers in Bioengineering and Biotechnology, vol: 11

Type: Journal article (Peer reviewed)

Status: Published | Year: 2023 | DOI: https://doi.org/10.3389/fbioe.2023.1136095

Biogas upgrading using Clostridium autoethanogenum for value-added products

Heffernan, James K. ; Lai, Chun Yu ; Gonzalez-Garcia, R. Axayacatl ; Keld Nielsen, Lars ; Guo, Jianhua ; Marcellin, Esteban
in: Chemical Engineering Journal, vol: 452

Type: Journal article (Peer reviewed)

Status: Published | Year: 2023 | DOI: https://doi.org/10.1016/j.cej.2022.138950

Bridging Depth Estimation and Completion for Mobile Robots Reliable 3D Perception

Arapis, Dimitrios ; Jami, Milad ; Nalpantidis, Lazaros
part of: Robot Intelligence Technology and Applications 7 , pages: 169-179, 2023
Presented at: 10^th International Conference on Robot Intelligence Technology and Applications

Type: Article in proceedings (Peer reviewed)

Status: Published | Year: 2023 | DOI: https://doi.org/10.1007/978-3-031-26889-2_16

Cardiovascular and haematological pathology in myalgic encephalomyelitis/chronic fatigue syndrome (ME/CFS)

Nunes, Jean M. ; Kell, Douglas B. ; Pretorius, Etheresia
in: Blood Reviews

Type: Journal article (Peer reviewed)

Status: Accepted/In press | Year: 2023 | DOI: https://doi.org/10.1016/j.blre.2023.101075

Challenges and opportunities in bringing nonbiological atoms to life with synthetic metabolism

Haas, Robert ; Nikel, Pablo I
in: Trends in Biotechnology

Type: Journal article (Peer reviewed)

Status: Accepted/In press | Year: 2023 | DOI: https://doi.org/10.1016/j.tibtech.2022.06.004

Characterisation of two snake toxin-targeting human monoclonal immunoglobulin G antibodies expressed in tobacco plants

Moore, Catherine M. ; Ljungars, Anne ; Paul, Matthew J. ; Dahl, Camilla Holst ; Ahmadi, Shirin ; Adams, Anna Christina ; Grav, Lise Marie ; Schoffelen, Sanne ; Voldborg, Bjørn Gunnar ; Laustsen, Andreas Hougaard ; Ma, Julian K-C
in: Toxicon, vol: 232

Type: Journal article (Peer reviewed)

Status: Published | Year: 2023 | DOI: https://doi.org/10.1016/j.toxicon.2023.107225

Characterization of tyrosine ammonia lyases from Flavobacterium johnsonian and Herpetosiphon aurantiacus

Virklund, Alexander ; Jendresen, Christian Bille ; Nielsen, Alex Toftgaard ; Woodley, John M
in: Biotechnology Journal, pages: e2300111

Type: Journal article (Peer reviewed)

Status: Accepted/In press | Year: 2023 | DOI: https://doi.org/10.1002/biot.202300111

Choice under risk

von Bülow, Catharina Wolff

Type: Other contribution

Status: Published | Year: 2023

ClusterCAD 2.0: an updated computational platform for chimeric type I polyketide synthase and nonribosomal peptide synthetase design

Tao, Xavier B. ; LaFrance, Sarah ; Xing, Yifei ; Nava, Alberto A. ; Martin, Hector Garcia ; Keasling, Jay D. ; Backman, Tyler W. H.
in: Nucleic Acids Research, vol: 51, issue: D1

Type: Journal article (Peer reviewed)

Status: Published | Year: 2023 | DOI: https://doi.org/10.1093/nar/gkac1075

Collateral Sensitivity to Fosfomycin of Tobramycin-Resistant Mutants of Pseudomonas aeruginosa Is Contingent on Bacterial Genomic Background

Genova, Roberta ; Laborda, Pablo ; Cuesta, Trinidad ; Martínez, José Luis ; Sanz-García, Fernando
in: International Journal of Molecular Sciences , vol: 24, issue: 8

Type: Journal article (Peer reviewed)

Status: Published | Year: 2023 | DOI: https://doi.org/10.3390/ijms24086892

Combining genetic engineering and bioprocess concepts for improved phenylpropanoid production

Virklund, Alexander ; Jensen, Sheila I. ; Nielsen, Alex T. ; Woodley, John M.
in: Biotechnology and Bioengineering, vol: 120, issue: 3, pages: 613-628

Type: Journal article (Peer reviewed)

Status: Published | Year: 2023 | DOI: https://doi.org/10.1002/bit.28292

Complete Genome Sequences of the Two Strains Methylorubrum extorquens NBC_00036 and NBC_00404

Faurdal, David ; Jørgensen, Tue S. ; Alvarez-Arevalo, Maria ; Mourched, Anna-Sophie ; Sterndorff, Eva B. ; Charusanti, Pep ; Weber, Tilmann
in: Microbiology Resource Announcements, vol: 12, issue: 7, pages: e0011523

Type: Journal article (Peer reviewed)

Status: Published | Year: 2023 | DOI: https://doi.org/10.1128/mra.00115-23

Complete integration of carbene-transfer chemistry into biosynthesis

Huang, Jing ; Quest, Andrew ; Cruz-Morales, Pablo ; Deng, Kai ; Pereira, Jose Henrique ; Van Cura, Devon ; Kakumanu, Ramu ; Baidoo, Edward E.K. ; Dan, Qingyun ; Chen, Yan ; Petzold, Christopher J. ; Northen, Trent R. ; Adams, Paul D. ; Clark, Douglas S. ; Balskus, Emily P. ; Hartwig, John F. ; Mukhopadhyay, Aindrila ; Keasling, Jay D.
in: Nature, vol: 617, issue: 7960, pages: 403-408

Type: Journal article (Peer reviewed)

Status: Published | Year: 2023 | DOI: https://doi.org/10.1038/s41586-023-06027-2

Publikationer

A comprehensive and systemic review of ginseng-based nanomaterials

Adaptive laboratory evolution of Bacillus subtilis to overcome toxicity of lignocellulosic hydrolysate derived from Distiller's dried grains with solubles (DDGS)

Adaptive laboratory evolution reveals general and specific chemical tolerance mechanisms and enhances biochemical production

Adaptive laboratory evolution to hypersaline conditions, of lactic acid bacteria isolated from seaweed

Alzheimer's Disease

An automated workflow for multi-omics screening of microbial model organisms

An engineered Escherichia coli Nissle 1917 increase the production of indole lactic acid in the gut

antiSMASH 7.0

Are we under- or overreacting to climate change? Adaptation behavior in ambiguous risk with various levels of risk history

A seven-transmembrane methyltransferase catalysing N-terminal histidine methylation of lytic polysaccharide monooxygenases

Assessing developability early in the discovery process for novel biologics

Automating the design-build-test-learn cycle towards next-generation bacterial cell factories

Biocontainment strategies for in vivo applications of Saccharomyces boulardii

Biogas upgrading using Clostridium autoethanogenum for value-added products

Bridging Depth Estimation and Completion for Mobile Robots Reliable 3D Perception

Cardiovascular and haematological pathology in myalgic encephalomyelitis/chronic fatigue syndrome (ME/CFS)

Challenges and opportunities in bringing nonbiological atoms to life with synthetic metabolism

Characterisation of two snake toxin-targeting human monoclonal immunoglobulin G antibodies expressed in tobacco plants

Characterization of tyrosine ammonia lyases from Flavobacterium johnsonian and Herpetosiphon aurantiacus

Choice under risk

ClusterCAD 2.0: an updated computational platform for chimeric type I polyketide synthase and nonribosomal peptide synthetase design

Collateral Sensitivity to Fosfomycin of Tobramycin-Resistant Mutants of Pseudomonas aeruginosa Is Contingent on Bacterial Genomic Background

Combining genetic engineering and bioprocess concepts for improved phenylpropanoid production

Complete Genome Sequences of the Two Strains Methylorubrum extorquens NBC_00036 and NBC_00404

Complete integration of carbene-transfer chemistry into biosynthesis