Publications

Publikationer rss feed

2024
 

A chromosome-scale genome assembly of Rauvolfia tetraphylla facilitates the identification of the complete ajmaline biosynthetic pathway

Lezin, Enzo ; Carqueijeiro, Inês ; Cuello, Clément ; Durand, Mickael ; Jansen, Hans J ; Vergès, Valentin ; Williams, Caroline Birer ; Oudin, Audrey ; De Bernonville, Thomas Duge ; Petrignet, Julien ; Celton, Noémie ; St-Pierre, Benoit ; Papon, Nicolas ; Sun, Chao ; Dirks, Ron P ; O'Connor, Sarah Ellen ; Jensen, Michael Krogh ; Besseau, Sébastien ; Courdavault, Vincent
in: Plant Communications

Type: Journal article (Peer reviewed)

Status: Accepted/In press     |    Year: 2024     |    DOI: https://doi.org/10.1016/j.xplc.2023.100784

  PDF

A comparative study of protein structure prediction tools for challenging targets

Kalogeropoulos, Konstantinos ; Bohn, Markus-Frederik ; Jenkins, David E. ; Ledergerber, Jann ; Sørensen, Christoffer V. ; Hofmann, Nils ; Wade, Jack ; Fryer, Thomas ; Nguyen, Giang Thi Tuyet ; auf dem Keller, Ullrich ; Laustsen, Andreas H. ; Jenkins, Timothy P.
in: Toxicon, vol: 238

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2024     |    DOI: https://doi.org/10.1016/j.toxicon.2023.107559

  PDF

A comparative study of the performance of E. coli and K. phaffii for expressing α-cobratoxin

Damsbo, Anna ; Rimbault, Charlotte ; Burlet, Nick J. ; Vlamynck, Anneline ; Bisbo, Ida ; Belfakir, Selma B. ; Laustsen, Andreas H. ; Rivera-de-Torre, Esperanza
in: Toxicon, vol: 239

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2024     |    DOI: https://doi.org/10.1016/j.toxicon.2024.107613

  PDF

Adaptive Evolution of Pseudomonas aeruginosa in Human Airways Shows Phenotypic Convergence Despite Diverse Patterns of Genomic Changes

Espaillat, Akbar ; Colque, Claudia Antonella ; Rago, Daniela ; Rosa, Ruggero La ; Molin, Søren ; Johansen, Helle Krogh
in: Molecular Biology and Evolution, vol: 41, issue: 2

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2024     |    DOI: https://doi.org/10.1093/molbev/msae022

  PDF

A data-driven approach for timescale decomposition of biochemical reaction networks

Akbari, Amir ; Haiman, Zachary B. ; Palsson, Bernhard O.
in: mSystems, vol: 9, issue: 2

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2024     |    DOI: https://doi.org/10.1128/msystems.01001-23

 

A General and Convenient Peptide Self-Assembling Mechanism for Developing Supramolecular Versatile Nanomaterials Based on The Biosynthetic Hybrid Amyloid-Resilin Protein

Wu, Junjun ; Zhou, Lin ; Peng, Hu ; Wang, Zhaojun ; Wang, Zhaoshi ; Keasling, Jay D ; Liu, Shike ; Zhou, Guanghong ; Ding, Shijie ; Wang, Qiong ; Wang, Xuejian ; Chen, Xinxiu ; Lang, Yifei ; Xia, Mo ; Guan, Xin ; Dong, Mingsheng ; Zhou, Jingwen ; Chen, Jian
in: Advanced Materials, vol: 36, issue: 4

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2024     |    DOI: https://doi.org/10.1002/adma.202304364

  PDF

A Hitchhiker’s guide to CRISPR editing tools in bacteria

Krink, Nicolas ; Nikel, Pablo Iván ; Beisel, Chase L.
in: EMBO Reports, vol: 25, pages: 1694 - 1699

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2024     |    DOI: https://doi.org/10.1038/s44319-024-00086-w

  PDF

Anaerobic glucose uptake in Pseudomonas putida KT2440 in a bioelectrochemical system

Pause, Laura ; Weimer, Anna ; Wirth, Nicolas T. ; Nguyen, Anh Vu ; Lenz, Claudius ; Kohlstedt, Michael ; Wittmann, Christoph ; Nikel, Pablo I. ; Lai, Bin ; Krömer, Jens O.
in: Microbial Biotechnology

Type: Journal article (Peer reviewed)

Status: Accepted/In press     |    Year: 2024     |    DOI: https://doi.org/10.1111/1751-7915.14375

  PDF

Antibacterial applications of biologically synthesized Pichia pastoris silver nanoparticles

More, Pragati Rajendra ; Shinde, Surbhi ; Cao, Zhejiang ; Zhang, Jian ; Pandit, Santosh ; De Filippis, Anna ; Mijakovic, Ivan ; Galdiero, Massimiliano
in: Heliyon, vol: 10, issue: 4

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2024     |    DOI: https://doi.org/10.1016/j.heliyon.2024.e25664

  PDF

Antibody-dependent enhancement of toxicity of myotoxin II from Bothrops asper

Sørensen, Christoffer V. ; Fernández, Julián ; Christina Adams, Anna ; Wildenauer, Helen H. K. ; Schoffelen, Sanne ; Ledsgaard, Line ; Pucca, Manuela B. ; Fiebig, Michael ; Cerni, Felipe A. ; Tulika, Tulika ; Voldborg, Bjørn G. ; Karatt-Vellat, Aneesh ; Morth, J. Preben ; Ljungars, Anne ; Grav, Lise M. ; Lomonte, Bruno ; Laustsen, Andreas H.
in: Nature Communications, vol: 15

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2024     |    DOI: https://doi.org/10.1038/s41467-023-42624-5

  PDF

An Untargeted Metabolomics Strategy to Identify Substrates of Known and Orphan E. coli Transporters

Radi, Mohammad ; Munro, Lachlan Jake ; Rago, Daniela ; Kell, Douglas
in: Membranes, vol: 14, issue: 3

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2024     |    DOI: https://doi.org/10.3390/membranes14030070

 

A Perspective on How Fibrinaloid Microclots and Platelet Pathology May be Applied in Clinical Investigations

Pretorius, Etheresia ; Kell, Douglas B.
in: Seminars in Thrombosis and Hemostasis

Type: Journal article (Peer reviewed)

Status: Accepted/In press     |    Year: 2024     |    DOI: https://doi.org/10.1055/s-0043-1774796

 

Are we under- or overreacting to climate change?

von Bülow, Catharina Wolff
in: Journal of Risk and Uncertainty

Type: Journal article (Peer reviewed)

Status: Accepted/In press     |    Year: 2024

  PDF

Automating relative and absolute environmental sustainability assessments of bio-based products

Meramo, Samir ; Pasutto, Eleonora ; Sukumara, Sumesh
in: Bioresource Technology, vol: 394

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2024     |    DOI: https://doi.org/10.1016/j.biortech.2023.130196

 

Carbene chemistry for unnatural biosynthesis

Huang, Jing ; Keasling, Jay D.
in: Science China Life Sciences

Type: Journal article (Peer reviewed)

Status: Accepted/In press     |    Year: 2024     |    DOI: https://doi.org/10.1007/s11427-023-2470-5

 

Characterization and Diversification of AraC/XylS Family Regulators Guided by Transposon Sequencing

Pearson, Allison N ; Incha, Matthew R ; Ho, Cindy N ; Schmidt, Matthias ; Roberts, Jacob B ; Nava, Alberto A ; Keasling, Jay D
in: ACS Synthetic Biology

Type: Journal article (Peer reviewed)

Status: Accepted/In press     |    Year: 2024     |    DOI: https://doi.org/10.1021/acssynbio.3c00441

  PDF

Chemoenzymatic indican for light-driven denim dyeing

Bidart, Gonzalo Nahuel ; Teze, David ; Jansen, Charlotte Uldahl ; Pasutto, Eleonora ; Putkaradze, Natalia ; Sesay, Anna Mamusu ; Fredslund, Folmer ; Lo Leggio, Leila ; Ögmundarson, Olafur ; Sukumara, Sumesh ; Qvortrup, Katrine ; Welner, Ditte Hededam
in: Nature Communications, vol: 15, issue: 1

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2024     |    DOI: https://doi.org/10.1038/s41467-024-45749-3

 

Codon-tRNA Coadaptation Bias for Identifying Strong Native Promoters in Komagataella phaffii

Kastberg, Louise La Barbera ; Petrov, Mykhaylo S. ; Strucko, Tomas ; Jensen, Michael K. ; Workman, Christopher T.
in: ACS Synthetic Biology, vol: 13, issue: 3, pages: 714-720

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2024     |    DOI: https://doi.org/10.1021/acssynbio.3c00567

 

Commensal production of a broad-spectrum and short-lived antimicrobial peptide polyene eliminates nasal Staphylococcus aureus

Torres Salazar, Benjamin O. ; Dema, Taulant ; Schilling, Nadine A. ; Janek, Daniela ; Bornikoel, Jan ; Berscheid, Anne ; Elsherbini, Ahmed M.A. ; Krauss, Sophia ; Jaag, Simon J. ; Lämmerhofer, Michael ; Li, Min ; Alqahtani, Norah ; Horsburgh, Malcolm J. ; Weber, Tilmann ; Beltrán-Beleña, José Manuel ; Brötz-Oesterhelt, Heike ; Grond, Stephanie ; Krismer, Bernhard ; Peschel, Andreas
in: Nature Microbiology, vol: 9, issue: 1, pages: 200-213

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2024     |    DOI: https://doi.org/10.1038/s41564-023-01544-2

  PDF

Complete biosynthesis of the potent vaccine adjuvant QS-21

Martin, Laetitia B.B. ; Kikuchi, Shingo ; Rejzek, Martin ; Owen, Charlotte ; Reed, James ; Orme, Anastasia ; Misra, Rajesh C. ; El-Demerdash, Amr ; Hill, Lionel ; Hodgson, Hannah ; Liu, Yuzhong ; Keasling, Jay D. ; Field, Robert A. ; Truman, Andrew W. ; Osbourn, Anne
in: Nature Chemical Biology, vol: 20, issue: 4, pages: 493-502

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2024     |    DOI: https://doi.org/10.1038/s41589-023-01538-5