Publications

A chromosome-scale genome assembly of Rauvolfia tetraphylla facilitates the identification of the complete ajmaline biosynthetic pathway

Lezin, Enzo ; Carqueijeiro, Inês ; Cuello, Clément ; Durand, Mickael ; Jansen, Hans J ; Vergès, Valentin ; Williams, Caroline Birer ; Oudin, Audrey ; De Bernonville, Thomas Duge ; Petrignet, Julien ; Celton, Noémie ; St-Pierre, Benoit ; Papon, Nicolas ; Sun, Chao ; Dirks, Ron P ; O'Connor, Sarah Ellen ; Jensen, Michael Krogh ; Besseau, Sébastien ; Courdavault, Vincent
in: Plant Communications

Type: Journal article (Peer reviewed)

Status: Accepted/In press | Year: 2024 | DOI: https://doi.org/10.1016/j.xplc.2023.100784

A comparative study of protein structure prediction tools for challenging targets

Kalogeropoulos, Konstantinos ; Bohn, Markus-Frederik ; Jenkins, David E. ; Ledergerber, Jann ; Sørensen, Christoffer V. ; Hofmann, Nils ; Wade, Jack ; Fryer, Thomas ; Nguyen, Giang Thi Tuyet ; auf dem Keller, Ullrich ; Laustsen, Andreas H. ; Jenkins, Timothy P.
in: Toxicon, vol: 238

Type: Journal article (Peer reviewed)

Status: Published | Year: 2024 | DOI: https://doi.org/10.1016/j.toxicon.2023.107559

A comparative study of the performance of E. coli and K. phaffii for expressing α-cobratoxin

Damsbo, Anna ; Rimbault, Charlotte ; Burlet, Nick J. ; Vlamynck, Anneline ; Bisbo, Ida ; Belfakir, Selma B. ; Laustsen, Andreas H. ; Rivera-de-Torre, Esperanza
in: Toxicon, vol: 239

Type: Journal article (Peer reviewed)

Status: Published | Year: 2024 | DOI: https://doi.org/10.1016/j.toxicon.2024.107613

Adaptive Evolution of Pseudomonas aeruginosa in Human Airways Shows Phenotypic Convergence Despite Diverse Patterns of Genomic Changes

Espaillat, Akbar ; Colque, Claudia Antonella ; Rago, Daniela ; Rosa, Ruggero La ; Molin, Søren ; Johansen, Helle Krogh
in: Molecular Biology and Evolution, vol: 41, issue: 2

Type: Journal article (Peer reviewed)

Status: Published | Year: 2024 | DOI: https://doi.org/10.1093/molbev/msae022

Adaptive laboratory evolution reveals general and specific chemical tolerance mechanisms and enhances biochemical production

Lennen, Rebecca M. ; Jensen, Kristian ; Mohammed, Elsayed T. ; Malla, Sailesh ; Börner, Rosa A. ; Chekina, Ksenia ; Özdemir, Emre ; Bonde, Ida ; Koza, Anna ; Maury, Jérôme ; Pedersen, Lasse E. ; Schöning, Lars Y. ; Sonnenschein, Nikolaus ; Palsson, Bernhard O. ; Sommer, Morten O. A. ; Feist, Adam M. ; Nielsen, Alex T. ; Herrgård, Markus J.
in: bioRxiv

Type: Journal article

Status: Submitted | Year: 2024 | DOI: https://doi.org/10.1101/634105

A data-driven approach for timescale decomposition of biochemical reaction networks

Akbari, Amir ; Haiman, Zachary B. ; Palsson, Bernhard O.
in: mSystems, vol: 9, issue: 2

Type: Journal article (Peer reviewed)

Status: Published | Year: 2024 | DOI: https://doi.org/10.1128/msystems.01001-23

A General and Convenient Peptide Self-Assembling Mechanism for Developing Supramolecular Versatile Nanomaterials Based on The Biosynthetic Hybrid Amyloid-Resilin Protein

Wu, Junjun ; Zhou, Lin ; Peng, Hu ; Wang, Zhaojun ; Wang, Zhaoshi ; Keasling, Jay D ; Liu, Shike ; Zhou, Guanghong ; Ding, Shijie ; Wang, Qiong ; Wang, Xuejian ; Chen, Xinxiu ; Lang, Yifei ; Xia, Mo ; Guan, Xin ; Dong, Mingsheng ; Zhou, Jingwen ; Chen, Jian
in: Advanced Materials, vol: 36, issue: 4

Type: Journal article (Peer reviewed)

Status: Published | Year: 2024 | DOI: https://doi.org/10.1002/adma.202304364

A Hitchhiker’s guide to CRISPR editing tools in bacteria

Krink, Nicolas ; Nikel, Pablo Iván ; Beisel, Chase L.
in: EMBO Reports, vol: 25, pages: 1694 - 1699

Type: Journal article (Peer reviewed)

Status: Published | Year: 2024 | DOI: https://doi.org/10.1038/s44319-024-00086-w

Anaerobic glucose uptake in Pseudomonas putida KT2440 in a bioelectrochemical system

Pause, Laura ; Weimer, Anna ; Wirth, Nicolas T. ; Nguyen, Anh Vu ; Lenz, Claudius ; Kohlstedt, Michael ; Wittmann, Christoph ; Nikel, Pablo I. ; Lai, Bin ; Krömer, Jens O.
in: Microbial Biotechnology

Type: Journal article (Peer reviewed)

Status: Accepted/In press | Year: 2024 | DOI: https://doi.org/10.1111/1751-7915.14375

A novel strategy for extraction of intracellular poly(3-hydroxybutyrate) from engineered Pseudomonas putida using deep eutectic solvents: Comparison with traditional biobased organic solvents

Didion, Yannick Patrice ; Vargas, Maria Victoria Gracia Alvan ; Tjaslma, Tjalling Gijsbert ; Woodley, John ; Nikel, Pablo Ivan ; Malankowska, Magdalena ; Su, Ziran ; Pinelo, Manuel
in: Separation and Purification Technology

Type: Journal article (Peer reviewed)

Status: Accepted/In press | Year: 2024 | DOI: https://doi.org/10.1016/j.seppur.2024.126465

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