Kai Blin

Kai Blin

Researcher

DTU BIOSUSTAIN
Novo Nordisk Foundation Center for Biosustainability

Technical University of Denmark

Kemitorvet

Building 220, room 326F

2800 Kgs. Lyngby

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2019
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antiSMASH 5.0: updates to the secondary metabolite genome mining pipeline

Blin, Kai ; Shaw, Simon ; Steinke, Katharina ; Villebro, Rasmus ; Ziemert, Nadine ; Lee, Sang Yup ; Medema, Marnix H ; Weber, Tilmann
in: Nucleic acids research, vol: 87, issue: W2, pages: W81-W87

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2019     |    DOI: https://doi.org/10.1093/nar/gkz310

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Recent development of antiSMASH and other computational approaches to mine secondary metabolite biosynthetic gene clusters

Blin, Kai ; Kim, Hyun Uk ; Medema, Marnix H. ; Weber, Tilmann
in: Briefings in Bioinformatics, vol: 20, issue: 4, pages: 1103-1113

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2019     |    DOI: https://doi.org/10.1093/bib/bbx146

 

Sequence-based classification of type II polyketide synthase biosynthetic gene clusters for antiSMASH

Villebro, Rasmus ; Shaw, Simon ; Blin, Kai ; Weber, Tilmann
in: Journal of Industrial Microbiology and Biotechnology, vol: 46, issue: 3-4, pages: 469-475

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2019     |    DOI: https://doi.org/10.1007/s10295-018-02131-9

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The antiSMASH database version 2: a comprehensive resource on secondary metabolite biosynthetic gene clusters

Blin, Kai ; Pascal Andreu, Victòria ; de Los Santos, Emmanuel L C ; Del Carratore, Francesco ; Lee, Sang Yup ; Medema, Marnix H. ; Weber, Tilmann
in: Nucleic acids research, vol: 47, issue: D1, pages: D625–D630

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2019     |    DOI: https://doi.org/10.1093/nar/gky1060

2018
 

Bioconda: sustainable and comprehensive software distribution for the life sciences

Grüning , Björn ; Dale, Ryan ; Sjödin, Andreas ; Chapman, Brad A. ; Rowe, Jillian ; Tomkins-Tinch, Christopher H. ; Valieris, Renan ; Köster, Johannes ; Blin, Kai ; Haudgaard, Mathias ; Kratz, Arne ; Junge, Alexander ; Knudsen, Michael
in: Nature Methods, vol: 15, pages: 475-476

Type: Comment/debate (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: https://doi.org/10.1038/s41592-018-0046-7

 

CRISPR-Cas9 Toolkit for Actinomycete Genome Editing

Tong, Yaojun ; Robertsen, Helene Lunde ; Blin, Kai ; Weber, Tilmann ; Lee, Sang Yup
part of: Synthetic Metabolic Pathways, pages: 163-184, 2018

Type: Book chapter (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: https://doi.org/10.1007/978-1-4939-7295-1_11

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Patscanui: an intuitive web interface for searching patterns in DNA and protein data

Blin, Kai ; Wohlleben, Wolfgang ; Weber, Tilmann
in: Nucleic acids research, vol: 46, issue: W1, pages: W205-W208

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: https://doi.org/10.1093/nar/gky321

2017
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antiSMASH 4.0-improvements in chemistry prediction and gene cluster boundary identification

Blin, Kai ; Wolf, Thomas ; Chevrette, Marc G. ; Lu, Xiaowen ; Schwalen, Christopher J. ; Kautsar, Satria A. ; Suarez Duran, Hernando G. ; de Los Santos, Emmanuel L. C. ; Kim, Hyun Uk ; Nave, Mariana ; Dickschat, Jeroen S. ; Mitchell, Douglas A. ; Shelest, Ekaterina ; Breitling, Rainer ; Takano, Eriko ; Lee, Sang Yup ; Weber, Tilmann ; Medema, Marnix H.
in: Nucleic acids research, vol: 45, pages: W36-W41

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: https://doi.org/10.1093/nar/gkx319

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Designing sgRNAs with CRISPy web

Blin, Kai ; Lee, Sang Yup ; Weber, Tilmann
in: Lab Times, issue: 1, pages: 53

Type: Journal article

Status: Published     |    Year: 2017