Publications - DTU Biosustain

An automated workflow for multi-omics screening of microbial model organisms

Donati, Stefano ; Mattanovich, Matthias ; Hjort, Pernille ; Baallal Jacobsen, Simo Abdessamad ; Blomquist, Sarah Dina ; Mangaard, Drude ; Gurdo, Nicolas ; Pacheco Pastor, Felix ; Maury, Jerome ; Hanke, René ; Herrgård, Markus J ; Wulff, Tune ; Jakociunas, Tadas ; Nielsen, Lars Keld ; McCloskey, Douglas
in: n p j Systems Biology and Applications, vol: 9

Type: Journal article (Peer reviewed)

Status: Published | Year: 2023 | DOI: https://doi.org/10.1101/2022.07.18.500181

An expanded CRISPR–Cas9-assisted recombineering toolkit for engineering genetically intractable Pseudomonas aeruginosa isolates

Pankratz, Debbie ; Gomez, Nicolas Oswaldo ; Nielsen, Agnes ; Mustafayeva, Ayten ; Gür, Melisa ; Arce-Rodriguez, Fabián ; Nikel, Pablo Ivan ; Häussler, Susanne ; Arce-Rodriguez, Alejandro
in: Nature Protocols, vol: 18, pages: 3253–3288

Type: Journal article (Peer reviewed)

Status: Published | Year: 2023 | DOI: https://doi.org/10.1038/s41596-023-00882-z

Automating the design-build-test-learn cycle towards next-generation bacterial cell factories

Gurdo, Nicolás ; Volke, Daniel C. ; McCloskey, Douglas ; Nikel, Pablo Iván
in: New Biotechnology

Type: Journal article (Peer reviewed)

Status: Accepted/In press | Year: 2023 | DOI: https://doi.org/10.1016/j.nbt.2023.01.002

Challenges and opportunities in bringing nonbiological atoms to life with synthetic metabolism

Haas, Robert ; Nikel, Pablo I
in: Trends in Biotechnology

Type: Journal article (Peer reviewed)

Status: Accepted/In press | Year: 2023 | DOI: https://doi.org/10.1016/j.tibtech.2022.06.004

Complex regulation in a Comamonas platform for diverse aromatic carbon metabolism

Wilkes, Rebecca A. ; Waldbauer, Jacob ; Caroll, Austin ; Nieto-Domínguez, Manuel ; Parker, Darren J. ; Zhang, Lichun ; Guss, Adam M. ; Aristilde, Ludmilla
in: Nature Chemical Biology, vol: 19, pages: 651-662

Type: Journal article (Peer reviewed)

Status: Published | Year: 2023 | DOI: https://doi.org/10.1038/s41589-022-01237-7

Core and auxiliary functions of one-carbon metabolism in Pseudomonas putida exposed by a systems-level analysis of transcriptional and physiological responses

Turlin, Justine ; Puiggené, Òscar ; Donati, Stefano ; Wirth, Nicolas T ; Nikel, Pablo I
in: mSystems

Type: Journal article (Peer reviewed)

Status: Accepted/In press | Year: 2023 | DOI: https://doi.org/10.1128/msystems.00004-23

Current landscape and future directions of synthetic biology in South America

Gomez-Hinostroza, E. Sebastian ; Gurdo, Nicolás ; Alvan Vargas, María Victoria Gracia ; Nikel, Pablo I. ; Guazzaroni, María Eugenia ; Guaman, Linda P. ; Castillo Cornejo, David J. ; Platero, Raúl ; Barba-Ostria, Carlos
in: Frontiers in Bioengineering and Biotechnology, vol: 11

Type: Review (Peer reviewed)

Status: Published | Year: 2023 | DOI: https://doi.org/10.3389/fbioe.2023.1069628

Emergent CRISPR–Cas-based technologies for engineering non-model bacteria

Volke, Daniel C. ; Orsi, Enrico ; Nikel, Pablo I.
in: Current Opinion in Microbiology, vol: 75

Type: Journal article (Peer reviewed)

Status: Published | Year: 2023 | DOI: https://doi.org/10.1016/j.mib.2023.102353

Engineering of Pseudomonas putida for accelerated co-utilization of glucose and cellobiose yields aerobic overproduction of pyruvate explained by an upgraded metabolic model

Bujdoš, Dalimil ; Popelářová, Barbora ; Volke, Daniel C. ; Nikel, Pablo I. ; Sonnenschein, Nikolaus ; Dvořák, Pavel
in: Metabolic Engineering, vol: 75, pages: 29-46

Type: Journal article (Peer reviewed)

Status: Published | Year: 2023 | DOI: https://doi.org/10.1016/j.ymben.2022.10.011

Exploiting synergies between microbial electrochemical technologies and synthetic biology

Lai, Bin ; Krömer, Jens ; Aulenta, Federico ; Wu, Hui ; Nikel, Pablo Ivan
in: Microbial Biotechnology, vol: 16, issue: 3, pages: 485-488

Type: Editorial (Peer reviewed)

Status: Published | Year: 2023 | DOI: https://doi.org/10.1111/1751-7915.14208