Publications

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2024
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A Hitchhiker’s guide to CRISPR editing tools in bacteria

Krink, Nicolas ; Nikel, Pablo Iván ; Beisel, Chase L.
in: EMBO Reports, vol: 25, pages: 1694 - 1699

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2024     |    DOI: https://doi.org/10.1038/s44319-024-00086-w

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Anaerobic glucose uptake in Pseudomonas putida KT2440 in a bioelectrochemical system

Pause, Laura ; Weimer, Anna ; Wirth, Nicolas T. ; Nguyen, Anh Vu ; Lenz, Claudius ; Kohlstedt, Michael ; Wittmann, Christoph ; Nikel, Pablo I. ; Lai, Bin ; Krömer, Jens O.
in: Microbial Biotechnology

Type: Journal article (Peer reviewed)

Status: Accepted/In press     |    Year: 2024     |    DOI: https://doi.org/10.1111/1751-7915.14375

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Bio-upcycling of even and uneven medium-chain-length diols and dicarboxylates to polyhydroxyalkanoates using engineered Pseudomonas putida

Ackermann, Yannic S. ; de Witt, Jan ; Mezzina, Mariela P. ; Schroth, Christoph ; Polen, Tino ; Nikel, Pablo I. ; Wynands, Benedikt ; Wierckx, Nick
in: Microbial Cell Factories, vol: 23, issue: 1

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2024     |    DOI: https://doi.org/10.1186/s12934-024-02310-7

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Engineering the carbon and redox metabolism of Paenibacillus polymyxa for efficient isobutanol production

Meliawati, Meliawati ; Volke, Daniel C. ; Nikel, Pablo I. ; Schmid, Jochen
in: Microbial Biotechnology, vol: 17, issue: 3

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2024     |    DOI: https://doi.org/10.1111/1751-7915.14438

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Genetic dissection of the degradation pathways for the mycotoxin fusaric acid in Burkholderia ambifaria T16

Vinacour, Matias ; Moiana, Mauro ; Forné, Ignasi ; Jung, Kirsten ; Bertea, Micaela ; Valdayo, Patricia M. Calero ; Nikel, Pablo I. ; Imhof, Axel ; Palumbo, Miranda C. ; Fernández Do Porto, Dario ; Ruiz, Jimena A.
in: Applied and Environmental Microbiology, vol: 89, issue: 12

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2024     |    DOI: https://doi.org/10.1128/aem.00630-23

 

How many Mutations are needed to Evolve the Chemical Makeup of a Synthetic Cell?

Lefèvre-Morand, Rodrigue Yves Louis ; Nikel, Pablo Iván ; Acevedo-Rocha, Carlos G.
in: ChemBioChem

Type: Journal article (Peer reviewed)

Status: Accepted/In press     |    Year: 2024     |    DOI: https://doi.org/10.1002/cbic.202300829

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The pAblo·pCasso self-curing vector toolset for unconstrained cytidine and adenine base-editing in Gram-negative bacteria

Kozaeva, Ekaterina ; Nielsen, Zacharias S. ; Nieto-Domínguez, Manuel ; Nikel, Pablo I.
in: Nucleic Acids Research, vol: 52, issue: 4

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2024     |    DOI: https://doi.org/10.1093/nar/gkad1236

2023
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An automated workflow for multi-omics screening of microbial model organisms

Donati, Stefano ; Mattanovich, Matthias ; Hjort, Pernille ; Baallal Jacobsen, Simo Abdessamad ; Blomquist, Sarah Dina ; Mangaard, Drude ; Gurdo, Nicolas ; Pacheco Pastor, Felix ; Maury, Jerome ; Hanke, René ; Herrgård, Markus J ; Wulff, Tune ; Jakociunas, Tadas ; Nielsen, Lars Keld ; McCloskey, Douglas
in: n p j Systems Biology and Applications, vol: 9

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2023     |    DOI: https://doi.org/10.1101/2022.07.18.500181

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An expanded CRISPR–Cas9-assisted recombineering toolkit for engineering genetically intractable Pseudomonas aeruginosa isolates

Pankratz, Debbie ; Gomez, Nicolas Oswaldo ; Nielsen, Agnes ; Mustafayeva, Ayten ; Gür, Melisa ; Arce-Rodriguez, Fabián ; Nikel, Pablo Ivan ; Häussler, Susanne ; Arce-Rodriguez, Alejandro
in: Nature Protocols, vol: 18, pages: 3253–3288

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2023     |    DOI: https://doi.org/10.1038/s41596-023-00882-z