Publications - DTU Biosustain

An automated workflow for multi-omics screening of microbial model organisms

Donati, Stefano ; Mattanovich, Matthias ; Hjort, Pernille ; Baallal Jacobsen, Simo Abdessamad ; Blomquist, Sarah Dina ; Mangaard, Drude ; Gurdo, Nicolas ; Pacheco Pastor, Felix ; Maury, Jerome ; Hanke, René ; Herrgård, Markus J ; Wulff, Tune ; Jakociunas, Tadas ; Nielsen, Lars Keld ; McCloskey, Douglas
in: n p j Systems Biology and Applications, vol: 9

Type: Journal article (Peer reviewed)

Status: Published | Year: 2023 | DOI: https://doi.org/10.1101/2022.07.18.500181

Automating the design-build-test-learn cycle towards next-generation bacterial cell factories

Gurdo, Nicolás ; Volke, Daniel C. ; McCloskey, Douglas ; Nikel, Pablo Iván
in: New Biotechnology

Type: Journal article (Peer reviewed)

Status: Accepted/In press | Year: 2023 | DOI: https://doi.org/10.1016/j.nbt.2023.01.002

Challenges and opportunities in bringing nonbiological atoms to life with synthetic metabolism

Haas, Robert ; Nikel, Pablo I
in: Trends in Biotechnology

Type: Journal article (Peer reviewed)

Status: Accepted/In press | Year: 2023 | DOI: https://doi.org/10.1016/j.tibtech.2022.06.004

Complex regulation in a Comamonas platform for diverse aromatic carbon metabolism

Wilkes, Rebecca A. ; Waldbauer, Jacob ; Caroll, Austin ; Nieto-Domínguez, Manuel ; Parker, Darren J. ; Zhang, Lichun ; Guss, Adam M. ; Aristilde, Ludmilla
in: Nature Chemical Biology

Type: Journal article (Peer reviewed)

Status: Accepted/In press | Year: 2023 | DOI: https://doi.org/10.1038/s41589-022-01237-7

Core and auxiliary functions of one-carbon metabolism in Pseudomonas putida exposed by a systems-level analysis of transcriptional and physiological responses

Turlin, Justine ; Puiggené, Òscar ; Donati, Stefano ; Wirth, Nicolas T ; Nikel, Pablo I
in: mSystems

Type: Journal article (Peer reviewed)

Status: Accepted/In press | Year: 2023 | DOI: https://doi.org/10.1128/msystems.00004-23

Current landscape and future directions of synthetic biology in South America

Gomez-Hinostroza, E. Sebastian ; Gurdo, Nicolás ; Alvan Vargas, María Victoria Gracia ; Nikel, Pablo I. ; Guazzaroni, María Eugenia ; Guaman, Linda P. ; Castillo Cornejo, David J. ; Platero, Raúl ; Barba-Ostria, Carlos
in: Frontiers in Bioengineering and Biotechnology, vol: 11

Type: Review (Peer reviewed)

Status: Published | Year: 2023 | DOI: https://doi.org/10.3389/fbioe.2023.1069628

Engineering of Pseudomonas putida for accelerated co-utilization of glucose and cellobiose yields aerobic overproduction of pyruvate explained by an upgraded metabolic model

Bujdoš, Dalimil ; Popelářová, Barbora ; Volke, Daniel C. ; Nikel, Pablo I. ; Sonnenschein, Nikolaus ; Dvořák, Pavel
in: Metabolic Engineering, vol: 75, pages: 29-46

Type: Journal article (Peer reviewed)

Status: Published | Year: 2023 | DOI: https://doi.org/10.1016/j.ymben.2022.10.011

Protocol for absolute quantification of proteins in Gram-negative bacteria based on QconCAT-based labeled peptides

Gurdo, Nicolás ; Taylor Parkins, Shannara Kayleigh ; Fricano, Martina ; Wulff, Tune ; Nielsen, Lars Keld ; Nikel, Pablo Iván
in: STAR Protocols, vol: 4, issue: 1

Type: Journal article (Peer reviewed)

Status: Published | Year: 2023 | DOI: https://doi.org/10.1016/j.xpro.2023.102060

QurvE: user-friendly software for the analysis of biological growth and fluorescence data

Wirth, Nicolas T. ; Funk, Jonathan ; Donati, Stefano ; Nikel, Pablo I.
in: Nature Protocols, vol: 18, issue: 8, pages: 2401-2403

Type: Journal article (Peer reviewed)

Status: Published | Year: 2023 | DOI: https://doi.org/10.1038/s41596-023-00850-7

Rewriting the symphony of life with synthetic metabolism - can enzymes play music?

Krink, Nicolas ; Nieto-Domínguez, Manuel ; Nikel, Pablo I.
part of: Grain and Noise - Artists in Synthetic Biology Labs, pages: 106-117, 2023

Type: Book chapter (Peer reviewed)

Status: Published | Year: 2023