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2023
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1000+ New Complete Genomes Aid Discovery Of Natural Products

Jørgensen, Tue Sparholt ; Mohite, Omkar Satyavan ; Sterndorff, Eva Baggesgaard ; Arévalo, María Álvarez ; Blin, Kai ; Booth, Thomas ; Charusanti, Pep ; Faurdal, David Lokjær ; Hansen, Troels Østergaard ; Mourched, Anna-Sophie ; Phaneuf, Patrick Victor ; Palsson, Bernhard ; Weber, Tilmann
part of: The Danish Microbiological Society Annual Congress 2023, pages: 82-82, 2023
Presented at:
The Danish Microbiological Society Annual Congress 2023

Type: Conference abstract in proceedings (Peer reviewed)

Status: Published     |    Year: 2023

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antiSMASH 7.0

Blin, Kai ; Shaw, Simon ; Augustijn, Hannah E ; Reitz, Zachary L ; Biermann, Friederike ; Alanjary, Mohammad ; Fetter, Artem ; Terlouw, Barbara R ; Metcalf, William W ; Helfrich, Eric J N ; van Wezel, Gilles P ; Medema, Marnix H ; Weber, Tilmann
in: Nucleic Acids Research, vol: 51, pages: 5

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2023     |    DOI: https://doi.org/10.1093/nar/gkad344

 

Artificial intelligence for natural product drug discovery

Mullowney, Michael W. ; Duncan, Katherine R. ; Elsayed, Somayah S. ; Garg, Neha ; van der Hooft, Justin J.J. ; Martin, Nathaniel I. ; Meijer, David ; Terlouw, Barbara R. ; Biermann, Friederike ; Blin, Kai ; Durairaj, Janani ; Gorostiola González, Marina ; Helfrich, Eric J.N. ; Huber, Florian ; Leopold-Messer, Stefan ; Rajan, Kohulan ; de Rond, Tristan ; van Santen, Jeffrey A. ; Sorokina, Maria ; Balunas, Marcy J. ; Beniddir, Mehdi A. ; van Bergeijk, Doris A. ; Carroll, Laura M. ; Clark, Chase M. ; Clevert, Djork Arné ; Dejong, Chris A. ; Du, Chao ; Ferrinho, Scarlet ; Grisoni, Francesca ; Hofstetter, Albert ; Jespers, Willem ; Kalinina, Olga V. ; Kautsar, Satria A. ; Kim, Hyunwoo ; Leao, Tiago F. ; Masschelein, Joleen ; Rees, Evan R. ; Reher, Raphael ; Reker, Daniel ; Schwaller, Philippe ; Segler, Marwin ; Skinnider, Michael A. ; Walker, Allison S. ; Willighagen, Egon L. ; Zdrazil, Barbara ; Ziemert, Nadine ; Goss, Rebecca J.M. ; Guyomard, Pierre ; Volkamer, Andrea ; Gerwick, William H. ; Kim, Hyun Uk ; Müller, Rolf ; van Wezel, Gilles P. ; van Westen, Gerard J.P. ; Hirsch, Anna K.H. ; Linington, Roger G. ; Robinson, Serina L. ; Medema, Marnix H.
in: Nature Reviews Drug Discovery, vol: 22, pages: 895-916

Type: Review (Peer reviewed)

Status: Published     |    Year: 2023     |    DOI: https://doi.org/10.1038/s41573-023-00774-7

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Complete, circular genome sequence of a Bosea sp. isolate from soil

Alvarez-Arevalo, Maria ; Sterndorff, Eva Baggesgaard ; Faurdal, David ; Mourched, Anna Sophie ; Charusanti, Pep ; Jørgensen, Tue Sparholt ; Weber, Tilmann
in: Microbiology Resource Announcements, vol: 12, issue: 9, pages: 1-3

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2023     |    DOI: https://doi.org/10.1128/MRA.00360-23

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Complete Genome Sequences of the Two Strains Methylorubrum extorquens NBC_00036 and NBC_00404

Faurdal, David ; Jørgensen, Tue S. ; Alvarez-Arevalo, Maria ; Mourched, Anna-Sophie ; Sterndorff, Eva B. ; Charusanti, Pep ; Weber, Tilmann
in: Microbiology Resource Announcements, vol: 12, issue: 7, pages: e0011523

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2023     |    DOI: https://doi.org/10.1128/mra.00115-23

 

Crossiellidines A-F, Unprecedented Pyrazine-Alkylguanidine Metabolites with Broad-Spectrum Antibacterial Activity from Crossiella sp.

Ortiz-López, Francisco Javier ; Oves-Costales, Daniel ; Carretero-Molina, Daniel ; Martín, Jesús ; Díaz, Caridad ; de la Cruz, Mercedes ; Román-Hurtado, Fernando ; Álvarez-Arévalo, María ; Jørgensen, Tue Sparholt ; Reyes, Fernando ; Weber, Tilmann ; Genilloud, Olga
in: Organic Letters, vol: 25, pages: 3502-3507

Type: Letter (Peer reviewed)

Status: Published     |    Year: 2023     |    DOI: https://doi.org/10.1021/acs.orglett.3c01088

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Embryogenesis of a calanoid copepod analyzed by transcriptomics

Acebal, Miguel Cifuentes ; Dalgaard, Louise Torp ; Jørgensen, Tue Sparholt ; Hansen, Benni Winding
in: Comparative Biochemistry and Physiology - Part D: Genomics and Proteomics, vol: 45

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2023     |    DOI: https://doi.org/10.1016/j.cbd.2022.101054

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Heterologous production of polycyclopropanated fatty acids and their methyl esters in Streptomyces

Yin, Kevin ; Cruz-Morales, Pablo ; Whitford, Christopher M. ; Keasling, Jay D.
in: STAR Protocols, vol: 4, issue: 2

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2023     |    DOI: https://doi.org/10.1016/j.xpro.2023.102190