All publications - DTU Biosustain

Embryogenesis of a calanoid copepod analyzed by transcriptomics

Acebal, Miguel Cifuentes ; Dalgaard, Louise Torp ; Jørgensen, Tue Sparholt ; Hansen, Benni Winding
in: Comparative Biochemistry and Physiology - Part D: Genomics and Proteomics, vol: 45

Type: Journal article (Peer reviewed)

Status: Published | Year: 2023 | DOI: https://doi.org/10.1016/j.cbd.2022.101054

Extraction and Oxford Nanopore sequencing of genomic DNA from filamentous Actinobacteria

Alvarez-Arevalo, Maria ; Sterndorff, Eva Baggesgaard ; Faurdal, David ; Jørgensen, Tue Sparholt ; Mourched, Anna-Sophie ; Vuksanovic, Oliwia ; Saha, Subhasish ; Weber, Tilmann
in: STAR Protocols, vol: 4, issue: 1

Type: Journal article (Peer reviewed)

Status: Published | Year: 2023 | DOI: https://doi.org/10.1016/j.xpro.2022.101955

Identification and heterologous expression of the globomycin biosynthetic gene cluster

Oves-Costales, Daniel ; Gren, Tetiana ; Sterndorff, Eva Baggesgaard ; Martín, Jesús ; Ortiz-López, Francisco Javier ; Jørgensen, Tue S. ; Jiang, Xinglin ; Román-Hurtado, Fernando ; Reyes, Fernando ; Genilloud, Olga ; Weber, Tilmann
in: Synthetic and Systems Biotechnology, vol: 8, issue: 2, pages: 206-212

Type: Journal article (Peer reviewed)

Status: Published | Year: 2023 | DOI: https://doi.org/10.1016/j.synbio.2023.02.001

MIBiG 3.0: a community-driven effort to annotate experimentally validated biosynthetic gene clusters

Terlouw, Barbara R ; Blin, Kai ; Navarro-Muñoz, Jorge C ; Avalon, Nicole E ; Chevrette, Marc G ; Egbert, Susan ; Lee, Sanghoon ; Meijer, David ; Recchia, Michael J J ; Reitz, Zachary L ; van Santen, Jeffrey A ; Selem-Mojica, Nelly ; Tørring, Thomas ; Zaroubi, Liana ; Alanjary, Mohammad ; Aleti, Gajender ; Aguilar, César ; Al-Salihi, Suhad A A ; Augustijn, Hannah E ; Avelar-Rivas, J Abraham ; Avitia-Domínguez, Luis A ; Barona-Gómez, Francisco ; Bernaldo-Agüero, Jordan ; Bielinski, Vincent A ; Biermann, Friederike ; Booth, Thomas J ; Carrion Bravo, Victor J ; Castelo-Branco, Raquel ; Chagas, Fernanda O ; Cruz-Morales, Pablo ; Du, Chao ; Duncan, Katherine R ; Gavriilidou, Athina ; Gayrard, Damien ; Gutiérrez-García, Karina ; Haslinger, Kristina ; Helfrich, Eric J N ; van der Hooft, Justin J J ; Jati, Afif P ; Kalkreuter, Edward ; Kalyvas, Nikolaos ; Kang, Kyo B ; Kautsar, Satria ; Kim, Wonyong ; Kunjapur, Aditya M ; Li, Yong-Xin ; Lin, Geng-Min ; Loureiro, Catarina ; Louwen, Joris J R ; Louwen, Nico L L ; Lund, George ; Parra, Jonathan ; Philmus, Benjamin ; Pourmohsenin, Bita ; Pronk, Lotte J U ; Rego, Adriana ; Rex, Devasahayam Arokia Balaya ; Robinson, Serina ; Rosas-Becerra, L Rodrigo ; Roxborough, Eve T ; Schorn, Michelle A ; Scobie, Darren J ; Singh, Kumar Saurabh ; Sokolova, Nika ; Tang, Xiaoyu ; Udwary, Daniel ; Vigneshwari, Aruna ; Vind, Kristiina ; Vromans, Sophie P J M ; Waschulin, Valentin ; Williams, Sam E ; Winter, Jaclyn M ; Witte, Thomas E ; Xie, Huali ; Yang, Dong ; Yu, Jingwei ; Zdouc, Mitja ; Zhong, Zheng ; Collemare, Jérôme ; Linington, Roger G ; Weber, Tilmann ; Medema, Marnix H
in: Nucleic Acids Research, vol: 51, issue: D1, pages: D603–D610

Type: Journal article (Peer reviewed)

Status: Published | Year: 2023 | DOI: https://doi.org/10.1093/nar/gkac1049

SpikeSeq: A rapid, cost efficient and simple method to identify SARS-CoV-2 variants of concern by Sanger sequencing part of the spike protein gene

Jørgensen, Tue Sparholt ; Pedersen, Martin Schou ; Blin, Kai ; Kuntke, Franziska ; Salling, Henrik K ; Marvig, Rasmus L. ; Michaelsen, Thomas Y ; Albertsen, Mads ; Larsen, Helene
in: Journal of Virological Methods, vol: 312

Type: Journal article (Peer reviewed)

Status: Published | Year: 2023 | DOI: https://doi.org/10.1016/j.jviromet.2022.114648

A Versatile in Vivo DNA Assembly Toolbox for Fungal Strain Engineering

Jarczynska, Zofia Dorota ; Garcia Vanegas, Katherina ; Deichmann, Marcus ; Nørskov Jensen, Christina ; Scheeper, Marouschka Jasmijn ; Futyma, Malgorzata Ewa ; Strucko, Tomas ; Jares Contesini, Fabiano ; Sparholt Jørgensen, Tue ; Blæsbjerg Hoof, Jakob ; Hasbro Mortensen, Uffe
in: ACS Synthetic Biology, vol: 11, issue: 10, pages: 3251-3263

Type: Journal article (Peer reviewed)

Status: Published | Year: 2022 | DOI: https://doi.org/10.1021/acssynbio.2c00159

Complete Genome Sequence of the Collinolactone Producer Streptomyces sp. Strain Go40/10

Sterndorff, Eva Baggesgaard ; Jørgensen, Tue Sparholt ; Garzon, Jaime Felipe Guerrero ; Schmid, Julian C. ; Grond, Stephanie ; Weber, Tilmann
in: Microbiology Resource Announcements, vol: 11, issue: 8

Type: Journal article

Status: Published | Year: 2022 | DOI: https://doi.org/10.1128/mra.00220-22

Critical Assessment of Metagenome Interpretation

Meyer, Fernando ; Fritz, Adrian ; Deng, Zhi-Luo ; Koslicki, David ; Lesker, Till Robin ; Gurevich, Alexey ; Robertson, Gary ; Alser, Mohammed ; Antipov, Dmitry ; Beghini, Francesco ; Bertrand, Denis ; Brito, Jaqueline J. ; Brown, C. Titus ; Buchmann, Jan ; Buluç, Aydin ; Chen, Bo ; Chikhi, Rayan ; Clausen, Philip T.L.C. ; Cristian, Alexandru ; Dabrowski, Piotr Wojciech ; Darling, Aaron E. ; Egan, Rob ; Eskin, Eleazar ; Georganas, Evangelos ; Goltsman, Eugene ; Gray, Melissa A. ; Hansen, Lars Hestbjerg ; Hofmeyr, Steven ; Huang, Pingqin ; Irber, Luiz ; Jia, Huijue ; Jørgensen, Tue Sparholt ; Kieser, Silas D. ; Klemetsen, Terje ; Kola, Axel ; Kolmogorov, Mikhail ; Korobeynikov, Anton ; Kwan, Jason ; LaPierre, Nathan ; Lemaitre, Claire ; Li, Chenhao ; Limasset, Antoine ; Malcher-Miranda, Fabio ; Mangul, Serghei ; Marcelino, Vanessa R. ; Marchet, Camille ; Marijon, Pierre ; Meleshko, Dmitry ; Mende, Daniel R. ; Milanese, Alessio ; Nagarajan, Niranjan ; Nissen, Jakob ; Nurk, Sergey ; Oliker, Leonid ; Paoli, Lucas ; Peterlongo, Pierre ; Piro, Vitor C. ; Porter, Jacob S. ; Rasmussen, Simon ; Rees, Evan R. ; Reinert, Knut ; Renard, Bernhard ; Robertsen, Espen Mikal ; Rosen, Gail L. ; Ruscheweyh, Hans-Joachim ; Sarwal, Varuni ; Segata, Nicola ; Seiler, Enrico ; Shi, Lizhen ; Sun, Fengzhu ; Sunagawa, Shinichi ; Sørensen, Søren Johannes ; Thomas, Ashleigh ; Tong, Chengxuan ; Trajkovski, Mirko ; Tremblay, Julien ; Uritskiy, Gherman ; Vicedomini, Riccardo ; Wang, Zhengyang ; Wang, Ziye ; Wang, Zhong ; Warren, Andrew ; Willassen, Nils Peder ; Yelick, Katherine ; You, Ronghui ; Zeller, Georg ; Zhao, Zhengqiao ; Zhu, Shanfeng ; Zhu, Jie ; Garrido-Oter, Ruben ; Gastmeier, Petra ; Hacquard, Stephane ; Häußler, Susanne ; Khaledi, Ariane ; Maechler, Friederike ; Mesny, Fantin ; Radutoiu, Simona ; Schulze-Lefert, Paul ; Smit, Nathiana ; Strowig, Till ; Bremges, Andreas ; Sczyrba, Alexander ; McHardy, Alice Carolyn
in: Nature Methods, vol: 19, issue: 4, pages: 429-440

Type: Journal article (Peer reviewed)

Status: Published | Year: 2022 | DOI: https://doi.org/10.1038/s41592-022-01431-4

Discovery of gargantulides B and C, new 52-membered macrolactones from Amycolatopsis sp. Complete absolute stereochemistry of the gargantulide family

Carretero-Molina, Daniel ; Ortiz-López, Francisco Javier ; Gren, Tetiana ; Oves-Costales, Daniel ; Martín, Jesús ; Román-Hurtado, Fernando ; Sparholt Jørgensen, Tue ; de la Cruz, Mercedes ; Díaz, Caridad ; Vicente, Francisca ; Blin, Kai ; Reyes, Fernando ; Weber, Tilmann ; Genilloud, Olga
in: Organic Chemistry Frontiers, vol: 9, issue: 2, pages: 462-470

Type: Journal article (Peer reviewed)

Status: Published | Year: 2022 | DOI: https://doi.org/10.1039/D1QO01480C

Editorial

Feng, Xinjun ; Jiang, Xinglin ; Zhao, Guang
in: Frontiers in Bioengineering and Biotechnology, vol: 10, pages: 1-3

Type: Editorial

Status: Published | Year: 2022 | DOI: https://doi.org/10.3389/fbioe.2022.1025797