All publications Bacterial Cell Factory Optimization

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ALL ARTICLE (59) DISSERTATION (1) BOOK (3) CONF (13) REPORT (1) MISC (0) PATENT (15) PEER REV (82)
2023
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Adaptive laboratory evolution of Bacillus subtilis to overcome toxicity of lignocellulosic hydrolysate derived from Distiller's dried grains with solubles (DDGS)

Driessen, Jasper L.S.P. ; Johnsen, Josefin ; Pogrebnyakov, Ivan ; Mohamed, Elsayed T.T. ; Mussatto, Solange I. ; Feist, Adam M. ; Jensen, Sheila I. ; Nielsen, Alex T.
in: Metabolic Engineering Communications, vol: 16

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2023     |    DOI: https://doi.org/10.1016/j.mec.2023.e00223

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Adaptive laboratory evolution reveals general and specific chemical tolerance mechanisms and enhances biochemical production

Lennen, Rebecca M. ; Jensen, Kristian ; Mohammed, Elsayed T. ; Malla, Sailesh ; Börner, Rosa A. ; Chekina, Ksenia ; Özdemir, Emre ; Bonde, Ida ; Koza, Anna ; Maury, Jérôme ; Pedersen, Lasse E. ; Schöning, Lars Y. ; Sonnenschein, Nikolaus ; Palsson, Bernhard O. ; Sommer, Morten O. A. ; Feist, Adam M. ; Nielsen, Alex T. ; Herrgård, Markus J.
in: bioRxiv

Type: Journal article

Status: Submitted     |    Year: 2023     |    DOI: https://doi.org/10.1101/634105

 

Combining genetic engineering and bioprocess concepts for improved phenylpropanoid production

Virklund, Alexander ; Jensen, Sheila I. ; Nielsen, Alex T. ; Woodley, John M.
in: Biotechnology and Bioengineering

Type: Journal article (Peer reviewed)

Status: Accepted/In press     |    Year: 2023     |    DOI: https://doi.org/10.1002/bit.28292

 

Folding of heterologous proteins in bacterial cell factories: Cellular mechanisms and engineering strategies

Rong, Yixin ; Jensen, Sheila Ingemann ; Lindorff-Larsen, Kresten ; Nielsen, Alex Toftgaard
in: Biotechnology Advances

Type: Journal article (Peer reviewed)

Status: Accepted/In press     |    Year: 2023     |    DOI: https://doi.org/10.1016/j.biotechadv.2022.108079

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Laboratory evolution reveals general and specific tolerance mechanisms for commodity chemicals

Lennen, Rebecca M. ; Lim, Hyun Gyu ; Jensen, Kristian ; Mohammed, Elsayed T. ; Phaneuf, Patrick V. ; Noh, Myung Hyun ; Malla, Sailesh ; Börner, Rosa A. ; Chekina, Ksenia ; Özdemir, Emre ; Bonde, Ida ; Koza, Anna ; Maury, Jérôme ; Pedersen, Lasse E. ; Schöning, Lars Y. ; Sonnenschein, Nikolaus ; Palsson, Bernhard O. ; Nielsen, Alex T. ; Sommer, Morten O.A. ; Herrgård, Markus J. ; Feist, Adam M.
in: Metabolic Engineering, vol: 76, pages: 179-192

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2023     |    DOI: https://doi.org/10.1016/j.ymben.2023.01.012

2022
 

A clean in-frame knockout system for gene deletion in Acetobacterium woodii

Baker, Jonathan P. ; Sáez-Sáez, Javier ; Jensen, Sheila I. ; Nielsen, Alex T. ; Minton, Nigel P.
in: Journal of Biotechnology, vol: 353, pages: 9-18

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2022     |    DOI: https://doi.org/10.1016/j.jbiotec.2022.05.013

 

Catalytic production of long-chain hydrocarbons suitable for jet-fuel use from fermentation-derived oxygenates

Doménech, Pablo ; Pogrebnyakov, Ivan ; Nielsen, Alex T. ; Riisager, Anders
in: Green Chemistry, vol: 24, issue: 9, pages: 3461-3474

Type: Review (Peer reviewed)

Status: Published     |    Year: 2022     |    DOI: https://doi.org/10.1039/D2GC00619G

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High-throughput colorimetric assays optimized for detection of ketones and aldehydes produced by microbial cell factories

Kozaeva, Ekaterina ; Mol, Viviënne ; Nikel, Pablo I. ; Nielsen, Alex Toftgaard
in: Microbial Biotechnology, vol: 15, issue: 9, pages: 2426-2438

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2022     |    DOI: https://doi.org/10.1111/1751-7915.14097

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Integration of Biomass Conversion, Cell Factory Optimization and Bioprocess Design to Innovate the Valorization of Lignocellulosic Fibers

Driessen, Jasper

Type: Ph.D. thesis

Status: Published     |    Year: 2022

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Methods and cells for production of volatile compounds

Pogrebnyakov, Ivan ; Nielsen, Alex Toftgaard
Patent no.: WO2022049125, Date: 2020-09-01

Type: Patent

Status: Published     |    Year: 2022