Publications

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2021
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Bacterial fitness landscapes stratify based on proteome allocation associated with discrete aero-types

Chen, Ke ; Anand, Amitesh ; Olson, Connor ; Sandberg, Troy E. ; Gao, Ye ; Mih, Nathan ; Palsson, Bernhard O.
in: PLOS Computational Biology, vol: 17, issue: 1

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2021     |    DOI: https://doi.org/10.1371/journal.pcbi.1008596

 

Bayesian genome scale modelling identifies thermal determinants of yeast metabolism

Li, Gang ; Hu, Yating ; Jan Zrimec, Zrimec ; Luo, Hao ; Wang, Hao ; Zelezniak, Aleksej ; Ji, Boyang ; Nielsen, Jens
in: Nature Communications, vol: 12, issue: 1

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2021     |    DOI: https://doi.org/10.1038/s41467-020-20338-2

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Benchmarking accuracy and precision of intensity-based absolute quantification of protein abundances in Saccharomyces cerevisiae

Sánchez, Benjamín J. ; Lahtvee, Petri Jaan ; Campbell, Kate ; Kasvandik, Sergo ; Yu, Rosemary ; Domenzain, Iván ; Zelezniak, Aleksej ; Nielsen, Jens
in: Proteomics, vol: 21, issue: 6

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2021     |    DOI: https://doi.org/10.1002/pmic.202000093

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Berberine reverses multidrug resistance in Candida albicans by hijacking the drug efflux pump Mdr1p

Tong, Yaojun ; Zhang, Jingyu ; Sun, Nuo ; Wang, Xiang Ming ; Wei, Qi ; Zhang, Yu ; Huang, Ren ; Pu, Yingying ; Dai, Huanqin ; Ren, Biao ; Pei, Gang ; Song, Fuhang ; Zhu, Guoliang ; Wang, Xinye ; Xia, Xuekui ; Chen, Xiangyin ; Jiang, Lan ; Wang, Shenlin ; Ouyang, Liming ; Xie, Ning ; Zhang, Buchang ; Jiang, Yuanying ; Liu, Xueting ; Calderone, Richard ; Bai, Fan ; Zhang, Lixin ; Alterovitz, Gil
in: Science Bulletin

Type: Journal article (Peer reviewed)

Status: Accepted/In press     |    Year: 2021     |    DOI: https://doi.org/10.1016/j.scib.2020.12.035

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BiG-FAM: the biosynthetic gene cluster families database

Kautsar, Satria A ; Blin, Kai ; Shaw, Simon ; Weber, Tilmann ; Medema, Marnix H.
in: Nucleic acids research, vol: 49, issue: D1, pages: D490–D497

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2021     |    DOI: https://doi.org/10.1093/nar/gkaa812

 

Biofuels for a sustainable future

Liu, Yuzhong ; Cruz-Morales, Pablo ; Zargar, Amin ; Belcher, Michael S. ; Pang, Bo ; Englund, Elias ; Dan, Qingyun ; Yin, Kevin ; Keasling, Jay D.
in: CELL, vol: 184, issue: 6, pages: 1636-1647

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2021     |    DOI: https://doi.org/10.1016/j.cell.2021.01.052

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Bioprocess intensification: Cases that (don't) work

van der Wielen, Luuk A.M. ; Mussatto, Solange I. ; van Breugel, Jan
in: New Biotechnology, vol: 61, pages: 108-115

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2021     |    DOI: https://doi.org/10.1016/j.nbt.2020.11.007

 

Biotechnological production of the European corn borer sex pheromone in the yeast Yarrowia lipolytica

Petkevicius, Karolis ; Koutsoumpeli, Eleni ; Betsi, Petri Christina ; Ding, Bao Jian ; Kildegaard, Kanchana Rueksomtawin ; Jensen, Hilbert ; Mezo, Nora ; Mazziotta, Andrea ; Gabrielsson, Anders ; Sinkwitz, Christina ; Lorantfy, Bettina ; Holkenbrink, Carina ; Löfstedt, Christer ; Raptopoulos, Dimitris ; Konstantopoulou, Maria ; Borodina, Irina
in: Biotechnology Journal

Type: Journal article (Peer reviewed)

Status: Accepted/In press     |    Year: 2021     |    DOI: https://doi.org/10.1002/biot.202100004

 

Brazilian biorefineries from second generation biomass: critical insights from industry and future perspectives

Chandel, Anuj K. ; Forte, Marcus B.S. ; Gonçalves, Igor S. ; Milessi, Thais S. ; Arruda, Priscila V. ; Carvalho, Walter ; Mussatto, Solange I.
in: Biofuels, Bioproducts and Biorefining, vol: 15, issue: 4, pages: 1190-1208

Type: Review (Peer reviewed)

Status: Published     |    Year: 2021     |    DOI: https://doi.org/10.1002/bbb.2234

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Characterization of local gut microbiome and intestinal transcriptome responses to rosiglitazone treatment in diabetic db/db mice

Madsen, Mette Simone Aae ; Grønlund, Rikke Veggerby ; Eid, John ; Christensen-Dalsgaard, Mikkel ; Sommer, Morten Otto Alexander ; Rigbolt, Kristoffer ; Madsen, Martin Rønn ; Jelsing, Jacob ; Vrang, Niels ; Hansen, Henrik H. ; Mikkelsen, Martin Tue
in: Biomedicine and Pharmacotherapy, vol: 133

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2021     |    DOI: https://doi.org/10.1016/j.biopha.2020.110966