Adam Feist

Adam Feist

Senior Researcher and Co-PI

DTU BIOSUSTAIN
Novo Nordisk Foundation Center for Biosustainability

Technical University of Denmark

Kemitorvet

Building 220, room x

2800 Kgs. Lyngby

Request a vCard via e-mail.

Publications
Projects
DTU news
Loading

Publications rss feed

2019
  PDF

Aledb 1.0: A database of mutations from adaptive laboratory evolution experimentation

Phaneuf, Patrick V. ; Gosting, Dennis ; Palsson, Bernhard O. ; Feist, Adam M.
in: Nucleic acids research, vol: 47, issue: D1, pages: D1164-D1171

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2019     |    DOI: https://doi.org/10.1093/nar/gky983

  PDF

BOFdat: Generating biomass objective functions for genome-scale metabolic models from experimental data

Lachance, Jean Christophe ; Lloyd, Colton J. ; Monk, Jonathan M. ; Yang, Laurence ; Sastry, Anand V. ; Seif, Yara ; Palsson, Bernhard O. ; Rodrigue, Sébastien ; Feist, Adam M. ; King, Zachary A. ; Jacques, Pierre Étienne
in: PLOS Computational Biology, vol: 15, issue: 4

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2019     |    DOI: https://doi.org/10.1371/journal.pcbi.1006971

 

Cellular responses to reactive oxygen species are predicted from molecular mechanisms

Yang, Laurence ; Mih, Nathan ; Anand, Amitesh ; Park, Joon Ho ; Tan, Justin ; Yurkovich, James T. ; Monk, Jonathan M. ; Lloyd, Colton J. ; Sandberg, Troy E. ; Seo, Sang Woo ; Kim, Donghyuk ; Sastry, Anand V. ; Phaneuf, Patrick ; Gao, Ye ; Broddrick, Jared T. ; Chen, Ke ; Heckmann, David ; Szubin, Richard ; Hefner, Ying ; Feist, Adam M. ; Palsson, Bernhard O.
in: Proceedings of the National Academy of Sciences of the United States of America, vol: 116, issue: 28, pages: 14368-14373

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2019     |    DOI: https://doi.org/10.1073/pnas.1905039116

  PDF

Characterization of CA-MRSA TCH1516 exposed to nafcillin in bacteriological and physiological media

Poudel, Saugat ; Tsunemoto, Hannah ; Meehan, Michael ; Szubin, Richard ; Olson, Connor A. ; Lamsa, Anne ; Seif, Yara ; Dillon, Nicholas ; Vrbanac, Alison ; Sugie, Joseph ; Dahesh, Samira ; Monk, Jonathan M. ; Dorrestein, Pieter C. ; Pogliano, Joseph ; Knight, Rob ; Nizet, Victor ; Palsson, Bernhard O. ; Feist, Adam M.
in: Scientific Data, vol: 6, issue: 1

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2019     |    DOI: https://doi.org/10.1038/s41597-019-0051-4

  PDF

Enzyme promiscuity shapes adaptation to novel growth substrates

Guzmán, Gabriela I. ; Sandberg, Troy E. ; LaCroix, Ryan A. ; Nyerges, Ákos ; Papp, Henrietta ; de Raad, Markus ; King, Zachary A. ; Hefner, Ying ; Northen, Trent R. ; Notebaart, Richard A. ; Pál, Csaba ; Palsson, Bernhard O. ; Papp, Balázs ; Feist, Adam M.
in: Molecular Systems Biology, vol: 15, issue: 4

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2019     |    DOI: https://doi.org/10.15252/msb.20188462

  PDF

Generation of an E. coli platform strain for improved sucrose utilization using adaptive laboratory evolution

Mohamed, Elsayed Tharwat Tolba ; Mundhada, Hemanshu ; Landberg, Jenny Marie ; Cann, Isaac ; Mackie, Roderick I. ; Nielsen, Alex Toftgaard ; Herrgard, Markus J. ; Feist, Adam M.
in: Microbial Cell Factories, vol: 18

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2019     |    DOI: https://doi.org/10.1186/s12934-019-1165-2

 

Pseudogene repair driven by selection pressure applied in experimental evolution

Anand, Amitesh ; Olson, Connor A. ; Yang, Laurence ; Sastry, Anand V. ; Catoiu, Edward ; Choudhary, Kumari Sonal ; Phaneuf, Patrick V. ; Sandberg, Troy E. ; Xu, Sibei ; Hefner, Ying ; Szubin, Richard ; Feist, Adam ; Palsson, Bernhard
in: Nature Microbiology, vol: 4, issue: 3, pages: 386-389

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2019     |    DOI: https://doi.org/10.1038/s41564-018-0340-2

 

The emergence of adaptive laboratory evolution as an efficient tool for biological discovery and industrial biotechnology

Sandberg, Troy E. ; Salazar, Michael J ; Weng, Liam L ; Palsson, Bernhard O ; Feist, Adam M
in: Metabolic Engineering

Type: Journal article (Peer reviewed)

Status: Accepted/In press     |    Year: 2019     |    DOI: https://doi.org/10.1016/j.ymben.2019.08.004

  PDF

The genetic basis for adaptation of model-designed syntrophic co-cultures

Lloyd, Colton J. ; King, Zachary A. ; Sandberg, Troy E. ; Hefner, Ying ; Olson, Connor A. ; Phaneuf, Patrick V. ; O'Brien, Edward J. ; Sanders, Jon G. ; Salido, Rodolfo A. ; Sanders, Karenina ; Brennan, Caitriona ; Humphrey, Gregory ; Knight, Rob ; Feist, Adam M.
in: PLOS Computational Biology, vol: 15, issue: 3

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2019     |    DOI: https://doi.org/10.1371/journal.pcbi.1006213