Important bio-chemical produced on a large scale by E.coli

Monday 09 Jan 17


Alex Toftgaard Nielsen
DTU Biosustain
+45 21 79 89 06

ALE accelerates experiment

  • ALE is short for ‘Adaptive Laboratory Evolution’ and refers to the rapid evolution, one can force organisms into undergoing in the laboratory.
  • The advantage of ALE is that the researchers do not need to know, which genes they have to turn off or on in order to get the desired result. This is ensured by the selection and evolution.
  • ALE experiments help researchers to test billions of cells and takes advantage of the natural selection that occurs when cells are being stressed by for example toxic substances.
  • The ALE robot constantly monitor the temperature, growth, mortality, nutritional content of the liquid and the cell density in small pipes. It would be practically impossible for a researcher to perform all these tests manually.

Serine can become a very interesting chemical to the industry

  • The E. coli cells from this experiment gave a yield of 25 to 30% - i.e., 250 to 300 grams of serine per kg sugar used making this process much cheaper than the so-called current glycine methanol whole cell based transformation.
  • Today, serine costs about 30 dollars pr. kg, but with this technique the aim is to bring down the cost to about 3 dollars pr. kg.
  • Serine is a very interesting biochemical, because the theoretical yield is about 97% – i.e. 97% of the carbon from the sugar can theoretically be converted to serine. This is in contrast to many other biochemicals, where the theoretical yield is around 30-50%. Furthermore, the sugar represents up to 70-80% of the price of a cheap biochemical, and therefore it is extremely important to have a high yield along with productivity.
  • The demand for serine is now around 1000 tons per year, but is expected to increase significantly, if the price drops.

E. coli cells have now been engineered into producing large quantities of serine, which is used in detergents, tube feeding formula, and as building blocks for many important chemicals. Using the evolutionary technique ALE, scientists managed to develop this robust and commercially interesting cell line.

If you had a company that manufactured valuable ingredients for chemicals like detergens or paint, you would probably like to produce the ingredients in large quantities, sustainably, and at a low cost. That's what researchers from The Novo Nordisk Foundation Center for Biosustainability - DTU Biosustain - at DTU can now do. The researchers have developed an E. coli cell line, which produces large quantities of the compound serine.

"This discovery is quite unique and proves that we can actually adapt cells to tolerate large amounts of serine – something many people thought wasn’t possible. In order to develop these cells, we used highly specialized robots that exists only at our Center in Denmark and in the US," says Professor Alex Toftgaard Nielsen from DTU Biosustain.

Serine is an amino acid important for humans, because it is one of the 20 amino acids forming proteins in our bodies. Being highly water soluble, serine finds application as moisturizer in lotions of pharma and cosmetic industry.

"This discovery is quite unique and proves that we can actually adapt cells to tolerate large amounts of serine – something many people thought wasn’t possible. "
Professor Alex Toftgaard Nielsen from DTU Biosustain

Further, there is a huge marked for serine in the chemical industry, because is can be converted into other chemicals such as plastics, detergents, dietary supplements and a variety of other products. In fact, serine has been mentioned as one of the 30 most promising biological substances to replace chemicals from the oil industry, if the production costs can be reduced.

Fermentation by bacteria is the most common method of producing amino acids. However, serine is toxic to the laboratory work horse E. coli, which quickly "gives up", if the bacterium is to produce large amounts of the substance.

The study is published in the journal Metabolic Engineering.

Robots are paramount

The first step in the development process was to produce E. coli cells that could survive high concentrations of serine. To achieve this, the scientists used so-called automated ‘Adaptive Laboratory Evolution’ (ALE) in which they first exposed the cells to a small amount of serine. When the cells had grown accustomed to these conditions, the bacteria were transferred to a slightly higher concentration. The experiment was repeated several times with the cells best suited to tolerate serine.

This experiment required highly specialized robots, lead author of the study Hemanshu Mundhada from DTU Biosustain explains:

"Cell growth must be monitored 24 hours a day, and the cells must be transferred to new medium at a certain time of growth. Moreover, we have so many samples, it would be almost impossible to monitor all the cells manually. Therefore, it is crucial that we use ALE robots. "

The tolerant E. coli cells were subsequently optimized genetically to produce serine, and in this way, they could suddenly produce 250 to 300 grams of serine for each kg of sugar (glucose) added, which is the largest productivity seen for serine ever.

Company should commercialize the cell line

Today, serine is already produced in other microbes by converting glycine and methanol. But these microbes must first be grown in large quantities, after which the glycine – which is chemically produced – is added. Glycine is relatively expensive, and therefore many are looking for cheaper and more sustainable production methods.

"We have shown that our E. coli cells can use regular sugar and even residues from sugar production, molasses, in lower concentrations. And we have seen promising results with less expensive sugars, which makes it even more attractive to produce serine in E. coli," says Hemanshu Mundhada.

The research team is now working to establish a company which will be responsible for producing serine on a larger scale.

"The goal is to make this cell line useful for society. And the best way to do that, is by getting a company to further develop and commercialize our results," says Alex Toftgaard Nielsen.

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