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Nikolaus Sonnenschein

Nikolaus Sonnenschein

Senior Researcher

DTU BIOSUSTAIN
Novo Nordisk Foundation Center for Biosustainability

Technical University of Denmark

Kemitorvet

Building 220, room 225F

2800 Kgs. Lyngby

Mobile +4521 79 89 22
E-mail niso@biosustain.dtu.dk
ORCID 0000-0002-7581-4936
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ALL Article in Journal (19) Academic Dissertation (0) Book (1) Conference (5) Report (0) MISC (0) PATENT (0) Peer Reviewed (26)
2019
  PDF

A consensus S. cerevisiae metabolic model Yeast8 and its ecosystem for comprehensively probing cellular metabolism

Lu, Hongzhong ; Li, Feiran ; Sánchez, Benjamín J ; Zhu, Zhengming ; Li, Gang ; Domenzain, Iván ; Marcišauskas, Simonas ; Anton, Petre Mihail ; Lappa, Dimitra ; Lieven, Christian ; Beber, Moritz Emanuel ; Sonnenschein, Nikolaus ; Kerkhoven, Eduard J ; Nielsen, Jens
in: Nature Communications, vol: 10, issue: 1, pages: 3586

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2019     |    DOI: https://doi.org/10.1038/s41467-019-11581-3

  PDF

Analysis of Pseudomonas putida growth on non-trivial carbon sources using transcriptomics and genome-scale modeling

D'Arrigo, Isotta ; Cardoso, João G. R. ; Rennig, Maja ; Sonnenschein, Nikolaus ; Herrgård, Markus J. ; Long, Katherine S.
in: Environmental Microbiology Reports, vol: 11, issue: 2, pages: 87-97

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2019     |    DOI: https://doi.org/10.1111/1758-2229.12704

 

Combined Rapid Injection NMR and Simulation Approach to Probe Redox-Dependent Pathway Control in Living Cells

Jensen, Pernille Rose ; Matos, Marta ; Sonnenschein, Nikolaus ; Meier, Sebastian
in: Analytical Chemistry, vol: 91, issue: 8, pages: 5395-5402

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2019     |    DOI: https://doi.org/10.1021/acs.analchem.9b00660

  PDF

Improving Reproducibility in Synthetic Biology

Jessop-Fabre, Mathew M. ; Sonnenschein, Nikolaus
in: Frontiers in Bioengineering and Biotechnology, vol: 7

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2019     |    DOI: https://doi.org/10.3389/fbioe.2019.00018

  PDF

Integration of enzymatic data in Bacillus subtilis genome-scale metabolic model improves phenotype predictions and enables in silico design of poly-γ-glutamic acid production strains

Massaiu, Ilaria ; Pasotti, Lorenzo ; Sonnenschein, Nikolaus ; Rama, Erlinda ; Cavaletti, Matteo ; Magni, Paolo ; Calvio, Cinzia ; Herrgård, Markus J.
in: Microbial Cell Factories, vol: 18

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2019     |    DOI: https://doi.org/10.1186/s12934-018-1052-2

  PDF

OptCouple: Joint simulation of gene knockouts, insertions and medium modifications for prediction of growth-coupled strain designs

Jensen, Kristian ; Broeken, Valentijn ; Hansen, Anne Sofie Lærke ; Sonnenschein, Nikolaus ; Herrgård, Markus J.
in: Metabolic Engineering Communications, vol: 8

Type: Journal article (Peer reviewed)

Status: Accepted/In press     |    Year: 2019     |    DOI: https://doi.org/10.1016/j.mec.2019.e00087

2018
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A Genome-Scale Metabolic Model for Methylococcus capsulatus (Bath) Suggests Reduced Efficiency Electron Transfer to the Particulate Methane Monooxygenase

Lieven, Christian ; Petersen, Leander A. H. ; Jørgensen, Sten Bay ; Gernaey, Krist V. ; Herrgard, Markus J. ; Sonnenschein, Nikolaus
in: Frontiers in Microbiology, vol: 9

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: https://doi.org/10.3389/fmicb.2018.02947

  PDF

Cameo: A Python Library for Computer Aided Metabolic Engineering and Optimization of Cell Factories

Cardoso, Joao G.R. ; Jensen, Kristian ; Lieven, Christian ; Hansen, Anne Sofie Lærke ; Galkina, Svetlana ; Beber, Moritz ; Özdemir, Emre ; Herrgård, Markus J. ; Redestig, Henning ; Sonnenschein, Nikolaus
in: A C S Synthetic Biology, vol: 7, issue: 4, pages: 1163-1166

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: https://doi.org/10.1021/acssynbio.7b00423

  PDF

MARSI: metabolite analogues for rational strain improvement

Cardoso, João G. R. ; Zeidan, Ahmad A ; Jensen, Kristian ; Sonnenschein, Nikolaus ; Neves, Ana Rute ; Herrgård, Markus J
in: Bioinformatics, vol: 34, issue: 13, pages: 2319-2321

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: https://doi.org/10.1093/bioinformatics/bty108

  PDF

Microbial Methylotrophic Metabolism: Recent Metabolic Modeling Efforts and Their Applications In Industrial Biotechnology

Lieven, Christian ; Herrgård, Markus J. ; Sonnenschein, Nikolaus
in: Biotechnology Journal, vol: 13, issue: 8

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: https://doi.org/10.1002/biot.201800011


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