Bernhard Palsson

Bernhard Palsson

CEO

DTU BIOSUSTAIN
Novo Nordisk Foundation Center for Biosustainability

Technical University of Denmark

Kemitorvet

Building 220, room 527F

2800 Kgs. Lyngby

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2018
 

Adaptation to the coupling of glycolysis to toxic methylglyoxal production in tpiA deletion strains of Escherichia coli requires synchronized and counterintuitive genetic changes

McCloskey, Douglas ; Xu, Sibei ; Sandberg, Troy E. ; Brunk, Elizabeth ; Hefner, Ying ; Szubin, Richard ; Feist, Adam M. ; Palsson, Bernhard O.
in: Metabolic Engineering, vol: 48, pages: 82-93

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: https://doi.org/10.1016/j.ymben.2018.05.012

 

Adaptive laboratory evolution resolves energy depletion to maintain high aromatic metabolite phenotypes in Escherichia coli strains lacking the Phosphotransferase System

McCloskey, Douglas ; Xu, Sibei ; Sandberg, Troy E. ; Brunk, Elizabeth ; Hefner, Ying ; Szubin, Richard ; Feist, Adam M. ; Palsson, Bernhard O.
in: Metabolic Engineering, vol: 48, pages: 233-242

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: https://doi.org/10.1016/j.ymben.2018.06.005

  PDF

A unified resource for transcriptional regulation in Escherichia coli K-12 incorporating high-throughput-generated binding data into RegulonDB version 10.0

Santos-Zavaleta, Alberto ; Sanchez-Perez, Mishael ; Salgado, Heladia ; Velazquez-Ramirez, David A. ; Gama-Castro, Socorro ; Tierrafria, Victor H. ; Busby, Stephen J. W. ; Aquino, Patricia ; Fang, Xin ; Palsson, Bernhard O. ; Galagan, James E. ; Collado-Vides, Julio
in: B M C Biology, vol: 16

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: https://doi.org/10.1186/s12915-018-0555-y

 

Characterizing posttranslational modifications in prokaryotic metabolism using a multiscale workflow

Brunk, Elizabeth ; Chang, Roger L. ; Xia, Jing ; Hefzi, Hooman ; Yurkovich, James T. ; Kim, Donghyuk ; Buckmiller, Evan ; Wang, Harris H. ; Cho, Byung-Kwan ; Yang, Chen ; Palsson, Bernhard O. ; Church, George M. ; Lewis, Nathan E.
in: Proceedings of the National Academy of Sciences of the United States of America, vol: 115, issue: 43, pages: 11096-11101

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: https://doi.org/10.1073/pnas.1811971115

  PDF

ChIP-exo interrogation of Crp, DNA, and RNAP holoenzyme interactions

Latif, Haythem ; Federowicz, Stephen ; Ebrahim, Ali ; Tarasova, Janna ; Szubin, Richard ; Utrilla, Jose ; Zengler, Karsten ; Palsson, Bernhard O.
in: P L o S One, vol: 13, issue: 5

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: https://doi.org/10.1371/journal.pone.0197272

  PDF

COBRAme: A computational framework for genome-scale models of metabolism and gene expression

Lloyd, Colton J. ; Ebrahim, Ali ; Yang, Laurence ; King, Zachary A. ; Catoiu, Edward ; O'Brien, Edward J. ; Liu, Joanne K. ; Polsson, Bernhard O.
in: P L o S Computational Biology (Online), vol: 14, issue: 7

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: https://doi.org/10.1371/journal.pcbi.1006302

  PDF

Dissecting the genetic and metabolic mechanisms of adaptation to the knockout of a major metabolic enzyme in Escherichia coli

Long, Christopher P. ; Gonzalez, Jacqueline E. ; Feist, Adam M. ; Palsson, Bernhard O. ; Antoniewicz, Maciek R.
in: Proceedings of the National Academy of Sciences of the United States of America, vol: 115, issue: 1, pages: 222-227

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: https://doi.org/10.1073/pnas.1716056115

  PDF

Escher-FBA: a web application for interactive flux balance analysis

Rowe, Elliot ; Palsson, Bernhard O. ; King, Zachary A.
in: BMC Systems Biology, vol: 12

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: https://doi.org/10.1186/s12918-018-0607-5

 

Estimating Metabolic Equilibrium Constants: Progress and Future Challenges

Du, Bin ; Zielinski, Daniel C. ; Palsson, Bernhard O.
in: Trends in Biochemical Sciences, vol: 43, issue: 12, pages: 960-969

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: https://doi.org/10.1016/j.tibs.2018.09.009

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Evolution of gene knockout strains of E-coli reveal regulatory architectures governed by metabolism

McCloskey, Douglas ; Xu, Sibei ; Sandberg, Troy E. ; Brunk, Elizabeth ; Hefner, Ying ; Szubin, Richard ; Feist, Adam M. ; Palsson, Bernhard O.
in: Nature Communications, vol: 9

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: https://doi.org/10.1038/s41467-018-06219-9


http://www.biosustain.dtu.dk/publications/person?id=66774&tab=2&qt=dtupublicationquery
19 JANUARY 2019