Publications

Publikationer rss feed

2019
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Chasing bacterial chassis for metabolic engineering: a perspective review from classical to non-traditional microorganisms

Calero, Patricia ; Nikel, Pablo I.
in: Microbial Biotechnology, vol: 12, issue: 1, pages: 98-124

Type: Review (Peer reviewed)

Status: Published     |    Year: 2019     |    DOI: https://doi.org/10.1111/1751-7915.13292

 

Fructo-oligosaccharides (FOS) production by fungal submerged culture using aguamiel as a low-cost by-product

Muñiz-Márquez, Diana B. ; Teixeira, José A. ; Mussatto, Solange I. ; Contreras-Esquivel, Juan C. ; Rodríguez-Herrera, Raúl ; Aguilar, Cristóbal N.
in: L W T- Food Science and Technology, vol: 102, pages: 75-79

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2019     |    DOI: https://doi.org/10.1016/j.lwt.2018.12.020

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Genome editing of lactic acid bacteria: opportunities for food, feed, pharma and biotech

Börner, Rosa A. ; Kandasamy, Vijayalakshmi ; Axelsen, Amalie M. ; Nielsen, Alex T. ; Bosma, Elleke F.
in: F E M S Microbiology Letters, vol: 366, issue: 1

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2019     |    DOI: https://doi.org/10.1093/femsle/fny291

 

Genome-Scale Metabolic Reconstruction of Actinomycetes for Antibiotics Production

Mohite, Omkar Satyavan ; Weber, Tilmann ; Kim, Hyun Uk ; Lee, Sang Yup
in: Biotechnology Journal, vol: 14, issue: 1

Type: Review (Peer reviewed)

Status: Published     |    Year: 2019     |    DOI: https://doi.org/10.1002/biot.201800377

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Meta synthetic biology: controlling the evolution of engineered living systems

Nørholm, Morten H. H.
in: Microbial Biotechnology, vol: 12, issue: 1, pages: 35-37

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2019     |    DOI: https://doi.org/10.1111/1751-7915.13350

 

Improving recombinant bone morphogenetic protein-4 (BMP-4) production by autoregulatory feedback loop removal using BMP receptor-knockout CHO cell lines

Kim, Che Lin ; Min Lee, Gyun
in: Metabolic Engineering, vol: 52, pages: 57-67

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2019     |    DOI: https://doi.org/10.1016/j.ymben.2018.11.003

 

Lipid engineering combined with systematic metabolic engineering of Saccharomyces cerevisiae for high-yield production of lycopene

Ma, Tian ; Shi, Bin ; Ye, Ziling ; Li, Xiaowei ; Liu, Min ; Chen, Yun ; Xia, Jiang ; Nielsen, Jens ; Deng, Zixin ; Liu, Tiangang
in: Metabolic Engineering, vol: 52, pages: 134-142

Type: Journal article (Peer reviewed)

Status: Accepted/In press     |    Year: 2019     |    DOI: https://doi.org/10.1016/j.ymben.2018.11.009

 

Liquid chromatography and mass spectrometry analysis of isoprenoid intermediates in Escherichia coli

Baidoo, Edward E.K. ; Wang, George ; Joshua, Chijioke J. ; Benites, Veronica Teixeira ; Keasling, Jay D.
part of: Microbial Metabolomics, pages: 209-224, 2019, Humana Press, New York

Type: Book chapter (Peer reviewed)

Status: Published     |    Year: 2019     |    DOI: https://doi.org/10.1007/978-1-4939-8757-3_11

 

Pretreatment of switchgrass by steam explosion in a semi-continuous pre-pilot reactor

Bonfiglio, Fernando ; Cagno, Matías ; Rey, Fabiana ; Torres, Marina ; Böthig, Silvia ; Menéndez, Pilar ; Mussatto, Solange I.
in: Biomass and Bioenergy, vol: 121, pages: 41-47

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2019     |    DOI: https://doi.org/10.1016/j.biombioe.2018.12.013

 

Sequence-based classification of type II polyketide synthase biosynthetic gene clusters for antiSMASH

Villebro, Rasmus ; Shaw, Simon ; Blin, Kai ; Weber, Tilmann
in: Journal of Industrial Microbiology and Biotechnology

Type: Journal article (Peer reviewed)

Status: Accepted/In press     |    Year: 2019     |    DOI: https://doi.org/10.1007/s10295-018-02131-9

 

Simultaneous quantification of multiple bacterial metabolites using surface-enhanced Raman scattering

Morelli, Lidia ; Centorbi, Francesca Alessandra ; Ilchenko, Oleksii ; Jendresen, Christian Bille ; Demarchi, Danilo ; Nielsen, Alex Toftgaard ; Zor, Kinga ; Boisen, Anja
in: Analyst

Type: Journal article (Peer reviewed)

Status: Accepted/In press     |    Year: 2019     |    DOI: https://doi.org/10.1039/C8AN02128G

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The antiSMASH database version 2: a comprehensive resource on secondary metabolite biosynthetic gene clusters

Blin, Kai ; Pascal Andreu, Victòria ; de Los Santos, Emmanuel L C ; Del Carratore, Francesco ; Lee, Sang Yup ; Medema, Marnix H. ; Weber, Tilmann
in: Nucleic Acids Research, vol: 47, issue: D1, pages: D625–D630

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2019     |    DOI: https://doi.org/10.1093/nar/gky1060

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The Synthetic Microbiology Caucus: from abstract ideas to turning microbes into cellular machines and back

Huang, Wei E. ; Nikel, Pablo I.
in: Microbial Biotechnology, vol: 12, issue: 1, pages: 5-7

Type: Editorial (Peer reviewed)

Status: Published     |    Year: 2019     |    DOI: https://doi.org/10.1111/1751-7915.13337

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Understanding metabolite transport gives an upper hand in strain development

Borodina, Irina
in: Microbial Biotechnology, vol: 12, issue: 1, pages: 69-70

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2019     |    DOI: https://doi.org/10.1111/1751-7915.13347

2018
 

Selecting of a cytochrome P450cam SeSaM library with 3-chloroindole and endosulfan – Identification of mutants that dehalogenate 3-chloroindole

Kammoonah, Shaima ; Prasad, Brinda ; Balaraman, Priyadarshini ; Mundhada, Hemanshu ; Schwaneberg, Ulrich ; Plettner, Erika
in: Biochimica et Biophysica Acta - Proteins and Proteomics, vol: 1866, issue: 1, pages: 68-79

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: https://doi.org/10.1016/j.bbapap.2017.09.006

 

A Capture-SELEX Strategy for Multiplexed Selection of RNA Aptamers Against Small Molecules

Lauridsen, Lasse Holm ; Doessing, Holger B. ; Long, Katherine S. ; Nielsen, Alex Toftgaard
part of: Synthetic Metabolic Pathways, pages: 291-306, 2018

Type: Book chapter (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: https://doi.org/10.1007/978-1-4939-7295-1_18

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Accelerated and Rational Design of Improved CHO Cell Factories

Grav, Lise Marie

Type: Ph.D. thesis

Status: Published     |    Year: 2018

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A combinatorial approach to synthetic transcription factor-promoter combinations for yeast strain engineering

Dossani, Zain Y. ; Apel, Amanda Reider ; Szmidt-Middleton, Heather ; Hillson, Nathan J. ; Deutsch, Samuel ; Keasling, Jay D. ; Mukhopadhyay, Aindrila
in: Yeast, vol: 35, issue: 3, pages: 273-280

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: https://doi.org/10.1002/yea.3292

 

Adaptation to the coupling of glycolysis to toxic methylglyoxal production in tpiA deletion strains of Escherichia coli requires synchronized and counterintuitive genetic changes

McCloskey, Douglas ; Xu, Sibei ; Sandberg, Troy E. ; Brunk, Elizabeth ; Hefner, Ying ; Szubin, Richard ; Feist, Adam M. ; Palsson, Bernhard O.
in: Metabolic Engineering, vol: 48, pages: 82-93

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: https://doi.org/10.1016/j.ymben.2018.05.012

 

Adaptive laboratory evolution resolves energy depletion to maintain high aromatic metabolite phenotypes in Escherichia coli strains lacking the Phosphotransferase System

McCloskey, Douglas ; Xu, Sibei ; Sandberg, Troy E. ; Brunk, Elizabeth ; Hefner, Ying ; Szubin, Richard ; Feist, Adam M. ; Palsson, Bernhard O.
in: Metabolic Engineering, vol: 48, pages: 233-242

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: https://doi.org/10.1016/j.ymben.2018.06.005

 

Advances and opportunities in biomass conversion technologies and biorefineries for the development of a bio-based economy

Yamakawa, Celina K. ; Qin, Fen ; Mussatto, Solange I.
in: Biomass and Bioenergy, vol: 119, pages: 54-60

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: https://doi.org/10.1016/j.biombioe.2018.09.007

 

Advances in analytical tools for high throughput strain engineering

Marcellin, Esteban ; Nielsen, Lars Keld
in: Current Opinion in Biotechnology, vol: 54, pages: 33-40

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: https://doi.org/10.1016/j.copbio.2018.01.027

 

Advances in synthetic biology of oleaginous yeast Yarrowia lipolytica for producing non-native chemicals

Darvishi, Farshad ; Ariana, Mehdi ; Marella, Eko Roy ; Borodina, Irina
in: Applied Microbiology and Biotechnology, vol: 102, issue: 14, pages: 5925-5938

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: https://doi.org/10.1007/s00253-018-9099-x

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Advancing biotechnology with CRISPR/Cas9: recent applications and patent landscape

Ferreira, Raphael ; David, Florian ; Nielsen, Jens
in: Journal of Industrial Microbiology and Biotechnology, vol: 45, issue: 7, pages: 467-480

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: https://doi.org/10.1007/s10295-017-2000-6


http://www.biosustain.dtu.dk/publications
19 JANUARY 2019