Publications

Publikationer rss feed

2018
 

Selecting of a cytochrome P450cam SeSaM library with 3-chloroindole and endosulfan – Identification of mutants that dehalogenate 3-chloroindole

Kammoonah, Shaima ; Prasad, Brinda ; Balaraman, Priyadarshini ; Mundhada, Hemanshu ; Schwaneberg, Ulrich ; Plettner, Erika
in journal: Biochimica et Biophysica Acta - Proteins and Proteomics (ISSN: 1570-9639) (DOI: http://dx.doi.org/10.1016/j.bbapap.2017.09.006), vol: 1866, issue: 1, pages: 68-79, 2018

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: http://dx.doi.org/10.1016/j.bbapap.2017.09.006

 

Production and physicochemical properties of carboxymethyl cellulose films enriched with spent coffee grounds polysaccharides

Ballesteros, Lina F. ; Cerqueira, Miguel A. ; Teixeira, Jose A. ; Mussatto, Solange I.
in journal: International Journal of Biological Macromolecules (ISSN: 0141-8130) (DOI: http://dx.doi.org/10.1016/j.ijbiomac.2017.08.060), vol: 106, pages: 647-655, 2018

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: http://dx.doi.org/10.1016/j.ijbiomac.2017.08.060

 

Underground metabolism: network-level perspective and biotechnological potential

Notebaart, Richard A ; Kintses, Bálint ; Feist, Adam ; Papp, Balázs
in journal: Current Opinion in Biotechnology (ISSN: 0958-1669) (DOI: http://dx.doi.org/10.1016/j.copbio.2017.07.015), vol: 49, pages: 108-114, 2018

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: http://dx.doi.org/10.1016/j.copbio.2017.07.015

 

Xylitol production by Debaryomyces hansenii and Candida guilliermondii from rapeseed straw hemicellulosic hydrolysate

López-Linares, Juan Carlos ; Romero, Inmaculada ; Cara, Cristobal ; Castro, Eulogio ; Mussatto, Solange I.
in journal: Bioresource Technology (ISSN: 0960-8524) (DOI: http://dx.doi.org/10.1016/j.biortech.2017.09.139), vol: 247, pages: 736-743, 2018

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: http://dx.doi.org/10.1016/j.biortech.2017.09.139

 

Serine/Threonine protein kinases from bacteria, archaea and eukarya share a common evolutionary origin deeply rooted in the tree of life

Stancik, Ivan Andreas ; Šestak, Martin Sebastijan ; Ji, Boyang ; Axelson-Fisk, Marina ; Franjevic, Damjan ; Jers, Carsten ; Domazet-Lošo, Tomislav ; Mijakovic, Ivan
in journal: Journal of Molecular Biology (ISSN: 0022-2836) (DOI: http://dx.doi.org/10.1016/j.jmb.2017.11.004), vol: 430, issue: 1, pages: 27-32, 2018

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: http://dx.doi.org/10.1016/j.jmb.2017.11.004

 

An Adaptive Laboratory Evolution Method to Accelerate Autotrophic Metabolism

Zhang, Tian ; Tremblay, Pier-Luc
part of: Synthetic Metabolic Pathways (ISBN: 978-1-4939-7294-4), pages: 149-161, 2018, Springer,

Type: Book chapter (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: http://dx.doi.org/10.1007/978-1-4939-7295-1_10

 

Design, Engineering, and Characterization of Prokaryotic Ligand-Binding Transcriptional Activators as Biosensors in Yeast

Ambri, Francesca ; Snoek, Tim ; Skjødt, Mette Louise ; Jensen, Michael Krogh ; Keasling, Jay
part of: Synthetic Metabolic Pathways (ISBN: 978-1-4939-7294-4), pages: 269-290, 2018, Springer,

Type: Book chapter (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: http://dx.doi.org/10.1007/978-1-4939-7295-1_17

 

Assembly and Multiplex Genome Integration of Metabolic Pathways in Yeast Using CasEMBLR

Jakociunas, Tadas ; Damgaard Jensen, Emil ; Jensen, Michael Krogh ; Keasling, Jay
part of: Synthetic Metabolic Pathways (ISBN: 978-1-4939-7294-4), pages: 185-201, 2018,

Type: Book chapter (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: http://dx.doi.org/10.1007/978-1-4939-7295-1_12

 

Computational Methods to Assess the Production Potential of Bio-Based Chemicals

Campodonico Alt, Miguel Angel ; Sukumara, Sumesh ; Feist, Adam ; Herrgard, Markus
part of: Synthetic Metabolic Pathways (ISBN: 978-1-4939-7294-4), pages: 97-116, 2018,

Type: Book chapter (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: http://dx.doi.org/10.1007/978-1-4939-7295-1_7

 

A Capture-SELEX Strategy for Multiplexed Selection of RNA Aptamers Against Small Molecules

Lauridsen, Lasse Holm ; Døssing, Holger ; Long, Katherine ; Nielsen, Alex Toftgaard
part of: Synthetic Metabolic Pathways (ISBN: 978-1-4939-7294-4), pages: 291-306, 2018,

Type: Book chapter (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: http://dx.doi.org/10.1007/978-1-4939-7295-1_18

 

Multiplex Genome Editing in Escherichia coli

Ingemann Jensen, Sheila ; Nielsen, Alex Toftgaard
part of: Synthetic Metabolic Pathways (ISBN: 978-1-4939-7294-4), pages: 119-129, 2018,

Type: Book chapter (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: http://dx.doi.org/10.1007/978-1-4939-7295-1_8

 

Parts Characterization for Tunable Protein Expression

Klausen, Michael Schantz ; Sommer, Morten Otto Alexander
part of: Synthetic Metabolic Pathways (ISBN: 978-1-4939-7294-4), pages: 3-14, 2018,

Type: Book chapter (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: http://dx.doi.org/10.1007/978-1-4939-7295-1_1

 

Selection of Highly Expressed Gene Variants in Escherichia coli Using Translationally Coupled Antibiotic Selection Markers

Rennig, Maja ; Daley, Daniel O. ; Nørholm, Morten
part of: Synthetic Metabolic Pathways (ISBN: 978-1-4939-7294-4), pages: 259-268, 2018,

Type: Book chapter (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: http://dx.doi.org/10.1007/978-1-4939-7295-1_16

 

CRISPR-Cas9 Toolkit for Actinomycete Genome Editing

Tong, Yaojun ; Robertsen, Helene Lunde ; Blin, Kai ; Weber, Tilmann ; Lee, Sang Yup
part of: Synthetic Metabolic Pathways (ISBN: 978-1-4939-7294-4), pages: 163-184, 2018,

Type: Book chapter (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: http://dx.doi.org/10.1007/978-1-4939-7295-1_11

 

Bacterial Genome Editing Strategy for Control of Transcription and Protein Stability

Lauritsen, Ida ; Martinez, Virginia ; Ronda, Carlotta ; Nielsen, Alex Toftgaard ; Nørholm, Morten
part of: Synthetic Metabolic Pathways (ISBN: 978-1-4939-7294-4), pages: 27-37, 2018,

Type: Book chapter (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: http://dx.doi.org/10.1007/978-1-4939-7295-1_3

 

Synthetic Metabolic Pathways

Jensen, Michael Krogh (Editor) ; Keasling, Jay (Editor)
Publisher: Springer, (ISBN: 978-1-4939-7294-4), pages: 354

Type: Book (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: http://dx.doi.org/10.1007/978-1-4939-7295-1

 

Sugarcane bagasse hydrolysate as a potential feedstock for red pigment production by Monascus ruber

Terán Hilares, Ruly ; de Souza, Rebeca Andrade ; Marcelino, Paulo Franco ; da Silva, Silvio Silvério ; Dragone, Giuliano ; Mussatto, Solange I. ; Santos, Júlio César
in journal: Food Chemistry (ISSN: 0308-8146) (DOI: http://dx.doi.org/10.1016/j.foodchem.2017.11.111), vol: 245, pages: 786-791, 2018

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: http://dx.doi.org/10.1016/j.foodchem.2017.11.111

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Drug-Driven Phenotypic Convergence Supports Rational Treatment Strategies of Chronic Infections

Imamovic, Lejla ; Ellabaan, Mostafa M Hashim ; Machado, Ana Manuel ; Citterio, Linda ; Wulff, Tune ; Molin, Søren ; Johansen, Helle Krogh ; Sommer, Morten Otto Alexander
in journal: Cell (ISSN: 0092-8674) (DOI: http://dx.doi.org/10.1016/j.cell.2017.12.012), 2018

Type: Journal article (Peer reviewed)

Status: Accepted/In press     |    Year: 2018     |    DOI: http://dx.doi.org/10.1016/j.cell.2017.12.012

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Correction to: Industrial antifoam agents impair ethanol fermentation and induce stress responses in yeast cells

Nielsen, Jens Christian Frøslev ; Senne de Oliveira Lino, Felipe ; Rasmussen, Thomas Gundelund ; Thykær, Jette ; Workman, Christopher ; Basso, Thiago Olitta
in journal: Applied Microbiology and Biotechnology (ISSN: 0175-7598) (DOI: http://dx.doi.org/10.1007/s00253-017-8643-4), vol: 102, issue: 1, pages: 513-513, 2018

Type: Comment/debate (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: http://dx.doi.org/10.1007/s00253-017-8643-4

 

TARSyn: Tunable Antibiotic Resistance Devices Enabling Bacterial Synthetic Evolution and Protein Production

Rennig, Maja ; Martinez, Virginia ; Mirzadeh, Kiavash ; Dunas, Finn ; Röjsäter, Belinda ; Daley, Daniel O ; Nørholm, Morten
in journal: A C S Synthetic Biology (ISSN: 2161-5063) (DOI: http://dx.doi.org/10.1021/acssynbio.7b00200), 2018

Type: Journal article (Peer reviewed)

Status: Accepted/In press     |    Year: 2018     |    DOI: http://dx.doi.org/10.1021/acssynbio.7b00200

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The Global Acetylome of the Human Pathogen Vibrio cholerae V52 Reveals Lysine Acetylation of Major Transcriptional Regulators

Jers, Carsten ; Ravikumar, Vaishnavi ; Lezyk, Mateusz Jakub ; Sultan, Abida ; Sjöling, Åsa ; Wai, Sun N. ; Mijakovic, Ivan
in journal: Frontiers in Cellular and Infection Microbiology (ISSN: 2235-2988) (DOI: http://dx.doi.org/10.3389/fcimb.2017.00537), vol: 7, 2018

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: http://dx.doi.org/10.3389/fcimb.2017.00537

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Complete Genome Sequence of Escherichia coli Strain WG5

Imamovic, Lejla ; Misiakou, Maria-Anna ; van der Helm, Eric ; Panagiotou, Gianni ; Muniesa, Maite ; Sommer, Morten Otto Alexander
in journal: Genome Announcements (ISSN: 2169-8287) (DOI: http://dx.doi.org/10.1128/genomeA.01403-17), vol: 6, issue: 2, 2018

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: http://dx.doi.org/10.1128/genomeA.01403-17

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Dissecting the genetic and metabolic mechanisms of adaptation to the knockout of a major metabolic enzyme in Escherichia coli

Long, Christopher P. ; Gonzalez, Jacqueline E. ; Feist, Adam ; Palsson, Bernhard ; Antoniewicz, Maciek R.
in journal: Proceedings of the National Academy of Sciences of the United States of America (ISSN: 0027-8424) (DOI: http://dx.doi.org/10.1073/pnas.1716056115), vol: 115, issue: 1, pages: 222-227, 2018

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: http://dx.doi.org/10.1073/pnas.1716056115

 

Using titer and titer normalized to confluence are complementary strategies for obtaining Chinese hamster ovary cell lines with high volumetric productivity of etanercept

Pristovsek, Nusa ; Hansen, Henning Gram ; Sergeeva, Daria ; Borth, Nicole ; Min Lee, Gyun ; Andersen, Mikael Rørdam ; Kildegaard, Helene Faustrup
in journal: Biotechnology Journal (ISSN: 1860-6768) (DOI: http://dx.doi.org/10.1002/biot.201700216), 2018

Type: Journal article (Peer reviewed)

Status: Accepted/In press     |    Year: 2018     |    DOI: http://dx.doi.org/10.1002/biot.201700216

 

EasyCloneYALI: CRISPR/Cas9-based synthetic toolbox for engineering of the yeast Yarrowia lipolytica

Holkenbrink, Carina ; Dam, Marie Inger ; Kildegaard, Kanchana Rueksomtawin ; Beder, Johannes ; Dahlin, Jonathan ; Belda, David Doménech ; Borodina, Irina
in journal: Biotechnology Journal (ISSN: 1860-6768) (DOI: http://dx.doi.org/10.1002/biot.201700543), 2018

Type: Journal article (Peer reviewed)

Status: Accepted/In press     |    Year: 2018     |    DOI: http://dx.doi.org/10.1002/biot.201700543

 

Modeling the multi-scale mechanisms of macromolecular resource allocation

Yang, Laurence ; Yurkovich, James T ; King, Zachary A ; Palsson, Bernhard
in journal: Current Opinion in Microbiology (ISSN: 1369-5274) (DOI: http://dx.doi.org/10.1016/j.mib.2018.01.002), vol: 45, pages: 8-15, 2018

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: http://dx.doi.org/10.1016/j.mib.2018.01.002

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Biochemical mechanisms determine the functional compatibility of heterologous genes

Porse, Andreas ; Schou, Thea S. ; Munck, Christian ; Ellabaan, Mostafa M Hashim ; Sommer, Morten Otto Alexander
in journal: Nature Communications (ISSN: 2041-1723) (DOI: http://dx.doi.org/10.1038/s41467-018-02944-3), vol: 9, 2018

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: http://dx.doi.org/10.1038/s41467-018-02944-3

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Hijacking CRISPR-Cas for high-throughput bacterial metabolic engineering: advances and prospects

Mougiakos, Ioannis ; Bosma, Elleke Fenna ; Ganguly , Joyshree ; van der Oost, John ; van Kranenburg, Richard
in journal: Current Opinion in Biotechnology (ISSN: 0958-1669) (DOI: http://dx.doi.org/10.1016/j.copbio.2018.01.002), vol: 50, pages: 146-157, 2018

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: http://dx.doi.org/10.1016/j.copbio.2018.01.002

 

Impact of CHO Metabolism on Cell Growth and Protein Production: An Overview of Toxic and Inhibiting Metabolites and Nutrients

Pereira, Sara ; Kildegaard, Helene Faustrup ; Andersen, Mikael Rørdam
in journal: Biotechnology Journal (Online) (ISSN: 1860-7314) (DOI: http://dx.doi.org/10.1002/biot.201700499), 2018

Type: Journal article (Peer reviewed)

Status: Accepted/In press     |    Year: 2018     |    DOI: http://dx.doi.org/10.1002/biot.201700499

 

Towards Improved Biophysical Calculations to Identify Disease-Causing Mutations

Lindorff-Larsen, Kresten ; Stein, Amelie ; Teilum, Kaare ; Nielsen, Alex Toftgaard ; Hartmann-Petersen, Rasmus
in journal: Biophysical Journal (ISSN: 0006-3495) (DOI: http://dx.doi.org/10.1016/j.bpj.2017.11.1115), vol: 114, issue: 3, Suppl 1, pages: 199a, 2018

Type: Conference abstract in journal (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: http://dx.doi.org/10.1016/j.bpj.2017.11.1115

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ClusterCAD: a computational platform for type I modular polyketide synthase design

Eng, Clara H. ; Backman, Tyler W. H. ; Bailey, Constance B. ; Magnan, Christophe ; Martin, Hector Garcia ; Katz, Leonard ; Baldi, Pierre ; Keasling, Jay
in journal: Nucleic Acids Research (ISSN: 0305-1048) (DOI: http://dx.doi.org/10.1093/nar/gkx893), vol: 46, issue: D1, pages: D509-D515, 2018

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: http://dx.doi.org/10.1093/nar/gkx893

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Constraining genome-scale models to represent the bow tie structure of metabolism for 13C metabolic flux analysis

Backman, Tyler W.H. ; Ando, David ; Singh, Jahnavi ; Keasling, Jay ; Martín, Héctor García
in journal: Metabolites (ISSN: 2218-1989) (DOI: http://dx.doi.org/10.3390/metabo8010003), vol: 8, issue: 1, 2018

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: http://dx.doi.org/10.3390/metabo8010003

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Isolation and characterization of novel mutations in the pSC101 origin that increase copy number

Thompson, Mitchell G. ; Sedaghatian, Nima ; Barajas, Jesus F. ; Wehrs, Maren ; Bailey, Constance B. ; Kaplan, Nurgul ; Hillson, Nathan J. ; Mukhopadhyay, Aindrila ; Keasling, Jay
in journal: Scientific Reports (ISSN: 2045-2322) (DOI: http://dx.doi.org/10.1038/s41598-018-20016-w), vol: 8, 2018

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: http://dx.doi.org/10.1038/s41598-018-20016-w

 

Universal Alternative Splicing of Noncoding Exons

Deveson, Ira W ; Brunck, Marion E ; Blackburn, James ; Tseng, Elizabeth ; Hon, Ting ; Clark, Tyson A ; Clark, Michael B ; Crawford, Joanna ; Dinger, Marcel E ; Nielsen, Lars Keld ; Mattick, John S ; Mercer, Tim R
in journal: Cell Systems (ISSN: 2405-4712) (DOI: http://dx.doi.org/10.1016/j.cels.2017.12.005), 2018

Type: Journal article (Peer reviewed)

Status: Accepted/In press     |    Year: 2018     |    DOI: http://dx.doi.org/10.1016/j.cels.2017.12.005

 

"It's a gut feeling" - Escherichia coli biofilm formation in the gastrointestinal tract environment

Rossi, Elio ; Cimdins, Annika ; Luthje, Petra ; Brauner, Annelie ; Sjoling, Asa ; Landini, Paolo ; Romling, Ute
in journal: Critical Reviews in Microbiology (ISSN: 1040-841X) (DOI: http://dx.doi.org/10.1080/1040841X.2017.1303660), vol: 44, issue: 1, 2018

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: http://dx.doi.org/10.1080/1040841X.2017.1303660

 

RNA-Seq Highlights High Clonal Variation in Monoclonal Antibody Producing CHO Cells

Orellana, Camila A. ; Marcellin, Esteban ; Palfreyman, Robin W. ; Munro, Trent P. ; Gray, Peter P. ; Nielsen, Lars Keld
in journal: Biotechnology Journal (ISSN: 1860-6768) (DOI: http://dx.doi.org/10.1002/biot.201700231), 2018

Type: Journal article (Peer reviewed)

Status: Accepted/In press     |    Year: 2018     |    DOI: http://dx.doi.org/10.1002/biot.201700231

 

Multiplexed CRISPR/Cas9 Genome Editing and Gene Regulation Using Csy4 in Saccharomyces cerevisiae

Ferreira, Raphael ; Skrekas, Christos ; Nielsen, Jens ; David, Florian
in journal: A C S Synthetic Biology (ISSN: 2161-5063) (DOI: http://dx.doi.org/10.1021/acssynbio.7b00259), vol: 7, issue: 1, pages: 10-15, 2018

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: http://dx.doi.org/10.1021/acssynbio.7b00259

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Expression of cocoa genes in Saccharomyces cerevisiae improves cocoa butter production

Wei, Yongjun ; Bergenholm, David ; Gossing, Michael ; Siewers, Verena ; Nielsen, Jens
in journal: Microbial Cell Factories (ISSN: 1475-2859) (DOI: http://dx.doi.org/10.1186/s12934-018-0866-2), vol: 17, issue: 1, 2018

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: http://dx.doi.org/10.1186/s12934-018-0866-2

2017
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VARIANTS OF ACETYLSEROTONIN O-METHYLTRANSFERASE AND USES THEREOF

Luo, Hao (Inventor)
Patent no.: WO2017202897, Date: 30-11-2017

Type: Patent

Status: Published     |    Year: 2017

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Genome-wide analysis of E. coli cell-gene interactions

Cardinale, Stefano ; Cambray, G.
in journal: BMC Systems Biology (ISSN: 1752-0509) (DOI: http://dx.doi.org/10.1186/s12918-017-0494-1), vol: 11, issue: 1, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1186/s12918-017-0494-1

 

High throughput in vivo protease inhibitor selection platform

van der Helm, Eric (Inventor) ; Sommer, Morten Otto Alexander (Inventor)
Patent no.: WO2017186854, Date: 02-11-2017

Type: Patent

Status: Published     |    Year: 2017

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Engineered mammalian cells for production of recombinant proteins

Voldborg, Bjørn Gunnar (Inventor) ; Pedersen, Lasse Ebdrup (Inventor)
Patent no.: WO2017186671, Date: 02-11-2017

Type: Patent

Status: Published     |    Year: 2017

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Optimized microbial cells for production of melatonin and other compounds

Luo, Hao (Inventor) ; Förster, Jochen (Inventor)
Patent no.: WO2017167866, Date: 05-10-2017

Type: Patent

Status: Published     |    Year: 2017

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Improved biological processes for the production of aryl sulfates

Jendresen, Christian Bille (Inventor) ; Nielsen, Alex Toftgaard (Inventor)
Patent no.: WO2017144671, Date: 31-08-2017

Type: Patent

Status: Published     |    Year: 2017

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A family of microbial lysine transporter polypeptides

Malla, Sailesh (Inventor) ; Sommer, Morten Otto Alexander (Inventor) ; van der Helm, Eric ; Wieschalka, Stefan (Inventor) ; Förster, Jochen
Patent no.: WO2017085241, Date: 26-05-2017

Type: Patent

Status: Published     |    Year: 2017

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A system for improved production titers in fermentations

Rugbjerg, Peter (Inventor) ; Sarup-Lytzen, Kira (Inventor) ; Sommer, Morten Otto Alexander (Inventor)
Patent no.: WO2017055360, Date: 06-04-2017

Type: Patent

Status: Published     |    Year: 2017

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Production of n-glycoproteins for enzyme assisted glycomodification

Herbert Rahmann, Shamim (Inventor) ; Behrens, Carsten (Inventor) ; Vester-Christensen, Malene Bech (Inventor) ; Clausen, Henrik (Inventor) ; Zhang, Yang (Inventor) ; Halim, Adnan Fevzi (Inventor) ; Bennett, Eric (Inventor)
Patent no.: WO2017008982, Date: 19-01-2017

Type: Patent

Status: Published     |    Year: 2017

 

Three-dimensional Hierarchical Metal oxide-Carbon Electrode Material for High Efficient Microbial Electrosynthesis

Cui, Mengmeng ; Nie, Huarong ; Zhang, Tian ; Lovley, Derek R. ; Russell, Thomas P.
in journal: Sustainable Energy & Fuels (ISSN: 2398-4902) (DOI: http://dx.doi.org/10.1039/C7SE00073A), vol: 1, pages: 1171-1176, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1039/C7SE00073A

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Increased production of L-serine in Escherichia coli through Adaptive Laboratory Evolution

Mundhada, Hemanshu ; Seoane, Jose Miguel ; Schneider, Konstantin ; Christensen, Hanne Bjerre ; Koza, Anna ; Herrgard, Markus ; Feist, Adam ; Nielsen, Alex Toftgaard
in journal: Metabolic Engineering (ISSN: 1096-7176) (DOI: http://dx.doi.org/10.1016/j.ymben.2016.11.008), vol: 39, pages: 141–150, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1016/j.ymben.2016.11.008

 

Production of organics from CO2 by microbial electrosynthesis (MES) at high temperature

Faraghi Parapari, Neda ; Zengler, Karsten
in journal: Journal of Chemical Technology and Biotechnology (ISSN: 0268-2575) (DOI: http://dx.doi.org/10.1002/jctb.5015), vol: 92, issue: 2, pages: 375–381, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1002/jctb.5015

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Whole-Genome Sequencing of Invasion-Resistant Cells Identifies Laminin α2 as a Host Factor for Bacterial Invasion

van Wijk, Xander M. ; Döhrmann, Simon ; Hallstrom, Bjorn ; Li, Shangzhong ; Voldborg, Bjørn Gunnar ; Meng, Brandon X. ; McKee, Karen K. ; van Kuppevelt, Toin H. ; Yurchenco, Peter D. ; Palsson, Bernhard ; Lewis, Nathan ; Nizet, Victor ; Esko, Jeffrey D.
in journal: mBio (ISSN: 2161-2129) (DOI: http://dx.doi.org/10.1128/mBio.02128-16), vol: 8, issue: 1, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1128/mBio.02128-16

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Ribosome profiling-guided depletion of an mRNA increases cell growth rate and protein secretion

Beuchert Kallehauge, Thomas ; Li, Shangzhong ; Pedersen, Lasse Ebdrup ; Kwang Ha, Tae ; Ley, Daniel ; Andersen, Mikael Rørdam ; Kildegaard, Helene Faustrup ; Min Lee, Gyun ; Lewis, Nathan E.
in journal: Scientific Reports (ISSN: 2045-2322) (DOI: http://dx.doi.org/10.1038/srep40388), vol: 7, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1038/srep40388

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FurIOS: a web-based tool for identification of Vibrionaceae species using the fur gene

Machado, Henrique ; Cardoso, Joao ; Giubergia, Sonia ; Rapacki, Kristoffer ; Gram, Lone
in journal: BMC Microbiology (ISSN: 1471-2180) (DOI: http://dx.doi.org/10.3389/fmicb.2017.00414), vol: 8, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.3389/fmicb.2017.00414

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Comparative Genomics Reveals High Genomic Diversity in the Genus Photobacterium

Machado, Henrique ; Gram, Lone
in journal: Frontiers in Microbiology (ISSN: 1664-302X) (DOI: http://dx.doi.org/10.3389/fmicb.2017.01204), vol: 8, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.3389/fmicb.2017.01204

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Biobased production of alkanes and alkenes through metabolic engineering of microorganisms

Kang, Min Kyoung ; Nielsen, Jens
in journal: Journal of Industrial Microbiology and Biotechnology (ISSN: 1367-5435) (DOI: http://dx.doi.org/10.1007/s10295-016-1814-y), vol: 44, issue: 4, pages: 613-622, 2017

Type: Review (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1007/s10295-016-1814-y

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The antiSMASH database, a comprehensive database of microbial secondary metabolite biosynthetic gene clusters

Blin, Kai ; Medema, Marnix H. ; Kottmann, Renzo ; Lee, Sang Yup ; Weber, Tilmann
in journal: Nucleic Acids Research (ISSN: 0305-1048) (DOI: http://dx.doi.org/10.1093/nar/gkw960), vol: 45, issue: D1, pages: D555-D559, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1093/nar/gkw960

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An expression tag toolbox for microbial production of membrane bound plant cytochromes P450

Vazquez Albacete, Dario ; Cavaleiro, Mafalda ; Christensen, Ulla ; Seppala, Susanna ; Møller, Birger Lindberg ; Nørholm, Morten
in journal: Biotechnology and Bioengineering (ISSN: 0006-3592) (DOI: http://dx.doi.org/10.1002/bit.26203), vol: 114, issue: 4, pages: 751-760, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1002/bit.26203

 

Evolutionary engineering reveals divergent paths when yeast is adapted to different acidic environments

Fletcher, Eugene ; Feizi, Amir ; Bisschops, Markus M. M. ; Hallström, Björn M. ; Khoomrung, Sakda ; Siewers, Verena ; Nielsen, Jens
in journal: Metabolic Engineering (ISSN: 1096-7176) (DOI: http://dx.doi.org/10.1016/j.ymben.2016.10.010), vol: 39, pages: 19–28, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1016/j.ymben.2016.10.010

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Global transcriptional response of solvent-sensitive and solvent-tolerant Pseudomonas putida strains exposed to toluene

Molina-Santiago, Carlos ; Udaondo, Zulema ; Gómez Lozano, María ; Molin, Søren ; Ramos, Juan-Luis
in journal: Environmental Microbiology (ISSN: 1462-2912) (DOI: http://dx.doi.org/10.1111/1462-2920.13585), vol: 19, issue: 2, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1111/1462-2920.13585

 

Extracellular Electron Uptake: Among Autotrophs and Mediated by Surfaces

Tremblay, Pier-Luc ; Angenent, Largus T. ; Zhang, Tian
in journal: Trends in Biotechnology (ISSN: 0167-7799) (DOI: http://dx.doi.org/10.1016/j.tibtech.2016.10.004), vol: 35, issue: 4, pages: 360-371, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1016/j.tibtech.2016.10.004

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Detection of p-coumaric acid from cell supernatant using surface enhanced Raman scattering

Morelli, Lidia ; Jendresen, Christian Bille ; Zor, Kinga ; Rindzevicius, Tomas ; Schmidt, Michael Stenbæk ; Nielsen, Alex Toftgaard ; Boisen, Anja
in journal: Procedia Technology (ISSN: 2212-0173) (DOI: http://dx.doi.org/10.1016/j.protcy.2017.04.081), vol: 27, pages: 190-192, 2017
Presented at:
Biosensors 2016, 2016, Gothenburg

Type: Conference abstract in journal (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1016/j.protcy.2017.04.081

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Predictive glycoengineering of biosimilars using a Markov chain glycosylation model

Spahn, Philipp N. ; Hansen, Anders Holmgaard ; Kol, Stefan ; Voldborg, Bjørn Gunnar ; Lewis, Nathan E.
in journal: Biotechnology Journal (ISSN: 1860-6768) (DOI: http://dx.doi.org/10.1002/biot.201600489), vol: 12, issue: 2, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1002/biot.201600489

 

Genome scale metabolic modeling of cancer

Nilsson, Avlant ; Nielsen, Jens
in journal: Metabolic Engineering (ISSN: 1096-7176) (DOI: http://dx.doi.org/10.1016/j.ymben.2016.10.022), vol: 43, issue: Part B, pages: 103-112, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1016/j.ymben.2016.10.022

 

Droplet size influences division of mammalian cell factories in droplet microfluidic cultivation

Periyannan Rajeswari, Prem Kumar ; Joensson, Haakan N. ; Svahn, Helene Andersson
in journal: Electrophoresis (ISSN: 0173-0835) (DOI: http://dx.doi.org/10.1002/elps.201600316), vol: 38, issue: 2, pages: 305–310, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1002/elps.201600316

 

Affibody scaffolds improve sesquiterpene production in Saccharomyces cerevisiae

Tippmann, Stefan ; Anfelt, Josefine ; David, Florian ; Rand, Jacqueline M. ; Siewers, Verena ; Uhlén, Mathias ; Nielsen, Jens ; Hudson, Elton Paul
in journal: A C S Synthetic Biology (ISSN: 2161-5063) (DOI: http://dx.doi.org/10.1021/acssynbio.6b00109), vol: 6, issue: 1, pages: 19-28, 2017

Type: Letter (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1021/acssynbio.6b00109

 

Engineer medium and feed for modulating N-glycosylation of recombinant protein production in CHO cell culture

Fan, Yuzhou ; Kildegaard, Helene Faustrup ; Andersen, Mikael Rørdam
part of: Heterologous Protein Production in CHO cells, pages: 209-226, 2016, Springer,

Type: Book chapter (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1007/978-1-4939-6972-2_14

 

Exploiting the potential of gas fermentation

Redl, Stephanie Maria Anna ; Diender, Martijn ; Jensen, Torbjørn Ølshøj ; Sousa, Diana Z. ; Nielsen, Alex Toftgaard
in journal: Industrial Crops and Products (ISSN: 0926-6690) (DOI: http://dx.doi.org/10.1016/j.indcrop.2016.11.015), vol: 106, pages: 21-30, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1016/j.indcrop.2016.11.015

 

Optimization of autohydrolysis conditions to extract antioxidant phenolic compounds from spent coffee grounds

Ballesteros, Lina F. ; Ramirez, Monica J. ; Orrego, Carlos E. ; Teixeira, Jose A. ; Mussatto, Solange I.
in journal: Journal of Food Engineering (ISSN: 0260-8774) (DOI: http://dx.doi.org/10.1016/j.jfoodeng.2016.11.014), vol: 199, pages: 1-8, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1016/j.jfoodeng.2016.11.014

 

The aldehyde dehydrogenase, AldA, is essential for L-1,2-propanediol utilization in laboratory-evolved Escherichia coli

Aziz, Ramy K. ; Monk, Jonathan M. ; Andrews, Kathleen A. ; Nhan, Jenny ; Khaw, Valerie L. ; Wong, Hesper ; Palsson, Bernhard ; Charusanti, Pep
in journal: Microbiological Research (ISSN: 0944-5013) (DOI: http://dx.doi.org/10.1016/j.micres.2016.10.006), vol: 194, pages: 47-52, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1016/j.micres.2016.10.006

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Improving the secretory capacity of Chinese hamster ovary cells by ectopic expression of effector genes: Lessons learned and future directions

Hansen, Henning Gram ; Pristovsek, Nusa ; Kildegaard, Helene Faustrup ; Min Lee, Gyun
in journal: Biotechnology Advances (ISSN: 0734-9750) (DOI: http://dx.doi.org/10.1016/j.biotechadv.2016.11.008), vol: 35, issue: 1, pages: 64–76, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1016/j.biotechadv.2016.11.008

 

Deciphering flux adjustments of engineered E. coli cells during fermentation with changing growth conditions

He, Lian ; Xiu, Yu ; Jones, J. Andrew ; Baidoo, Edward E. K. ; Keasling, Jay ; Tang, Yinjie J ; Koffas, Mattheos A. G.
in journal: Metabolic Engineering (ISSN: 1096-7176) (DOI: http://dx.doi.org/10.1016/j.ymben.2016.12.008), vol: 39, pages: 247–256, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1016/j.ymben.2016.12.008

 

Literature mining supports a next-generation modeling approach to predict cellular byproduct secretion

King, Zachary A. ; O'Brien, Edward J. ; Feist, Adam ; Palsson, Bernhard
in journal: Metabolic Engineering (ISSN: 1096-7176) (DOI: http://dx.doi.org/10.1016/j.ymben.2016.12.004), vol: 39, pages: 220–227, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1016/j.ymben.2016.12.004

 

Establishing very long-chain fatty alcohol and wax ester biosynthesis in Saccharomyces cerevisiae

Wenning, Leonie ; Yu, Tao ; David, Florian ; Nielsen, Jens ; Siewers, Verena
in journal: Biotechnology and Bioengineering (ISSN: 0006-3592) (DOI: http://dx.doi.org/10.1002/bit.26220), vol: 114, issue: 5, pages: 1025-1035, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1002/bit.26220

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Hyaluronidase-inhibitory activities of glycosaminoglycans from Liparis tessellatus eggs

Ticar, Bernadeth F. ; Rohmah, Zuliyati ; Mussatto, Solange I. ; Lim, Jae-Min ; Park, Seongha ; Choi, Byeong-Dae
in journal: Carbohydrate Polymers (ISSN: 0144-8617) (DOI: http://dx.doi.org/10.1016/j.carbpol.2016.12.065), vol: 161, pages: 15-20, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1016/j.carbpol.2016.12.065

 

Development of an acetic acid tolerant Spathaspora passalidarum strain through evolutionary engineering with resistance to inhibitors compounds of autohydrolysate of Eucalyptus globulus

Morales, Paulina ; Gentina, Juan Carlos ; Aroca, German ; Mussatto, Solange I.
in journal: Industrial Crops and Products (ISSN: 0926-6690) (DOI: http://dx.doi.org/10.1016/j.indcrop.2016.12.023), vol: 106, pages: 5-11, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1016/j.indcrop.2016.12.023

  PDF

Rapid resistome mapping using nanopore sequencing

van der Helm, Eric ; Imamovic, Lejla ; Ellabaan, Mostafa M Hashim ; van Schaik, Willem ; Koza, Anna ; Sommer, Morten Otto Alexander
in journal: Nucleic Acids Research (ISSN: 0305-1048) (DOI: http://dx.doi.org/10.1093/nar/gkw1328), vol: 45, issue: 8, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1093/nar/gkw1328

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A molecular genetic toolbox for Yarrowia lipolytica

Bredeweg, Erin L. ; Pomraning, Kyle R. ; Dai, Ziyu ; Nielsen, Jens ; Kerkhoven, Eduard J. ; Baker, Scott E.
in journal: Biotechnology for Biofuels (ISSN: 1754-6834) (DOI: http://dx.doi.org/10.1186/s13068-016-0687-7), vol: 10, issue: 2, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1186/s13068-016-0687-7

 

The CYP79A1 catalyzed conversion of tyrosine to (E)-p-hydroxyphenylacetaldoxime unravelled using an improved method for homology modeling

Vazquez Albacete, Dario ; Montefiori, Marco ; Kol, Stefan ; Motawia, Mohammed Saddik ; Møller, Birger Lindberg ; Olsen, Lars ; Nørholm, Morten
in journal: Phytochemistry (ISSN: 0031-9422) (DOI: http://dx.doi.org/10.1016/j.phytochem.2016.11.013), vol: 135, pages: 8-17, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1016/j.phytochem.2016.11.013

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Growth on Chitin Impacts the Transcriptome and Metabolite Profiles of Antibiotic-Producing Vibrio coralliilyticus S2052 and Photobacterium galatheae S2753

Giubergia, Sonia ; Phippen, Christopher ; Nielsen, Kristian Fog ; Gram, Lone
in journal: mSystems (ISSN: 2379-5077) (DOI: http://dx.doi.org/10.1128/mSystems.00141-16), vol: 2, issue: 1, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1128/mSystems.00141-16

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Genetic toolbox for controlled expression of functional proteins in Geobacillus spp.

Pogrebnyakov, Ivan ; Jendresen, Christian Bille ; Nielsen, Alex Toftgaard
in journal: PLOS ONE (ISSN: 1932-6203) (DOI: http://dx.doi.org/10.1371/journal.pone.0171313), vol: 12, issue: 2, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1371/journal.pone.0171313

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Selection of Bacillus species for targeted in situ release of prebiotic galacto-rhamnogalacturonan from potato pulp in piglets

Jers, Carsten ; Strube, Mikael Lenz ; Cantor, Mette D ; Nielsen, Bea K K ; Sørensen, Ole Brøsted ; Boye, Mette ; Meyer, Anne S.
in journal: Applied Microbiology and Biotechnology (ISSN: 0175-7598) (DOI: http://dx.doi.org/10.1007/s00253-017-8176-x), vol: 101, issue: 9, pages: 3605-3615, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1007/s00253-017-8176-x

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Network reconstruction of the mouse secretory pathway applied on CHO cell transcriptome data

Lund, Anne Mathilde ; Kaas, Christian Schrøder ; Brandl, Julian ; Pedersen, Lasse Ebdrup ; Kildegaard, Helene Faustrup ; Kristensen, Claus ; Andersen, Mikael Rørdam
in journal: B M C Systems Biology (ISSN: 1752-0509) (DOI: http://dx.doi.org/10.1186/s12918-017-0414-4), vol: 11, issue: 1, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1186/s12918-017-0414-4

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Reconstruction of the metabolic network of Pseudomonas aeruginosa to interrogate virulence factor synthesis

Bartell, Jennifer ; Blazier, Anna S ; Yen, Phillip ; Thøgersen, Juliane Charlotte ; Jelsbak, Lars ; Goldberg, Joanna B ; Papin, Jason A
in journal: Nature Communications (ISSN: 2041-1723) (DOI: http://dx.doi.org/10.1038/ncomms14631), vol: 8, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1038/ncomms14631

 

Surface Enhanced Raman Scattering for Quantification of p-Coumaric Acid Produced by Escherichia coli

Morelli, Lidia ; Zor, Kinga ; Jendresen, Christian Bille ; Rindzevicius, Tomas ; Schmidt, Michael Stenbæk ; Nielsen, Alex Toftgaard ; Boisen, Anja
in journal: Analytical Chemistry (ISSN: 0003-2700) (DOI: http://dx.doi.org/10.1021/acs.analchem.6b04428), vol: 89, pages: 3981-3987, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1021/acs.analchem.6b04428

 

Investigation of the indigenous fungal community populating barley grains: Secretomes and xylanolytic potential

Sultan, Abida ; Frisvad, Jens Christian ; Andersen, Birgit ; Svensson, Birte ; Finnie, Christine
in journal: Journal of Proteomics (ISSN: 1874-3919) (DOI: http://dx.doi.org/10.1016/j.jprot.2017.03.009), vol: 169, pages: 153-164, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1016/j.jprot.2017.03.009

 

Cell Factory Engineering

Davy, Anne Mathilde ; Kildegaard, Helene Faustrup ; Andersen, Mikael Rørdam
in journal: Cell Systems (ISSN: 2405-4712) (DOI: http://dx.doi.org/10.1016/j.cels.2017.02.010), vol: 4, issue: 3, pages: 262-275, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1016/j.cels.2017.02.010

 

Comprehensive in Vitro Analysis of Acyltransferase Domain Exchanges in Modular Polyketide Synthases and Its Application for Short-Chain Ketone Production

Yuzawa, Satoshi ; Deng, Kai ; Wang, George ; Baidoo, Edward E. K. ; Northen, Trent R. ; Adams, Paul D. ; Katz, Leonard ; Keasling, Jay
in journal: A C S Synthetic Biology (ISSN: 2161-5063) (DOI: http://dx.doi.org/10.1021/acssynbio.6b00176), vol: 6, issue: 1, pages: 139-147, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1021/acssynbio.6b00176

 

Development of an integrated approach for α-pinene recovery and sugar production from loblolly pine using ionic liquids

Papa, Gabriella ; Kirby, James ; Murthy Konda, N. V. S. N. ; Tran, Kim ; Singh, Seema ; Keasling, Jay ; Peter, Gary F. ; Simmons, Blake A.
in journal: Green Chemistry (ISSN: 1463-9262) (DOI: http://dx.doi.org/10.1039/c6gc02637k), vol: 19, pages: 1117-1127, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1039/c6gc02637k

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Increasing cocoa butter-like lipid production of Saccharomyces cerevisiae by expression of selected cocoa genes

Wei, Yongjun ; Gossing, Michael ; Bergenholm, David ; Siewers, Verena ; Nielsen, Jens
in journal: A M B Express (ISSN: 2191-0855) (DOI: http://dx.doi.org/10.1186/s13568-017-0333-1), vol: 7, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1186/s13568-017-0333-1

 

Systems Biology of Metabolism: A Driver for Developing Personalized and Precision Medicine

Nielsen, Jens
in journal: Cell Metabolism (ISSN: 1550-4131) (DOI: http://dx.doi.org/10.1016/j.cmet.2017.02.002), vol: 25, issue: 3, pages: 572-579, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1016/j.cmet.2017.02.002

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Vitamin C Pretreatment Enhances the Antibacterial Effect of Cold Atmospheric Plasma

Helgadottir, Saga ; Pandit, Santosh ; Mokkapati, Venkata R. S. S. ; Westerlund, Fredrik ; Apell, Peter ; Mijakovic, Ivan
in journal: Frontiers in Cellular and Infection Microbiology (ISSN: 2235-2988) (DOI: http://dx.doi.org/10.3389/fcimb.2017.00043), vol: 7, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.3389/fcimb.2017.00043

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Reliable and efficient solution of genome-scale models of Metabolism and macromolecular Expression

Ma, Ding ; Yang, Laurence ; Fleming, Ronan M. T. ; Thiele, Ines ; Palsson, Bernhard ; Saunders, Michael A.
in journal: Scientific Reports (ISSN: 2045-2322) (DOI: http://dx.doi.org/10.1038/srep40863), vol: 7, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1038/srep40863

 

Global Transcriptional Responses to Osmotic, Oxidative, and Imipenem Stress Conditions in Pseudomonas putida

Bojanovic, Klara ; D'Arrigo, Isotta ; Long, Katherine
in journal: Applied and Environmental Microbiology (ISSN: 0099-2240) (DOI: http://dx.doi.org/10.1128/AEM.03236-16), vol: 83, issue: 7, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1128/AEM.03236-16

 

Microbial production of astilbin, a bioactive rhamnosylated flavanonol, from taxifolin

Thuan, Nguyen Huy ; Malla, Sailesh ; Trung, Nguyen Thanh ; Dhakal, Dipesh ; Pokhrel, Anaya Raj ; Chu, Luan Luong ; Sohng, Jae Kyung
in journal: World Journal of Microbiology and Biotechnology (ISSN: 0959-3993) (DOI: http://dx.doi.org/10.1007/s11274-017-2208-7), vol: 33, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1007/s11274-017-2208-7

 

De-bugging and maximizing plant cytochrome P450 production in Escherichia coli with C-terminal GFP fusions

Christensen, Ulla ; Vazquez Albacete, Dario ; Søgaard, Karina Marie ; Hobel, Tonja ; Nielsen, Morten Thrane ; Harrison, Scott James ; Hansen, Anders Holmgaard ; Møller, Birger Lindberg ; Seppala, Susanna ; Nørholm, Morten
in journal: Applied Microbiology and Biotechnology (ISSN: 0175-7598) (DOI: http://dx.doi.org/10.1007/s00253-016-8076-5), vol: 101, issue: 10, pages: 4103-4113, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1007/s00253-016-8076-5

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Systems biology solutions for biochemical production challenges

Hansen, Anne Sofie Lærke ; Lennen, Rebecca ; Sonnenschein, Nikolaus ; Herrgard, Markus
in journal: Current Opinion in Biotechnology (ISSN: 0958-1669) (DOI: http://dx.doi.org/10.1016/j.copbio.2016.11.018), vol: 45, pages: 85-91, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1016/j.copbio.2016.11.018