Publications

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2018
 

An Adaptive Laboratory Evolution Method to Accelerate Autotrophic Metabolism

Zhang, Tian ; Tremblay, Pier-Luc
part of: Synthetic Metabolic Pathways (ISBN: 978-1-4939-7294-4), pages: 149-161, 2018, Springer,

Type: Book chapter (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: http://dx.doi.org/10.1007/978-1-4939-7295-1_10

 

Design, Engineering, and Characterization of Prokaryotic Ligand-Binding Transcriptional Activators as Biosensors in Yeast

Ambri, Francesca ; Snoek, Tim ; Skjødt, Mette Louise ; Jensen, Michael Krogh ; Keasling, Jay
part of: Synthetic Metabolic Pathways (ISBN: 978-1-4939-7294-4), pages: 269-290, 2018, Springer,

Type: Book chapter (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: http://dx.doi.org/10.1007/978-1-4939-7295-1_17

 

Assembly and Multiplex Genome Integration of Metabolic Pathways in Yeast Using CasEMBLR

Jakociunas, Tadas ; Damgaard Jensen, Emil ; Jensen, Michael Krogh ; Keasling, Jay
part of: Synthetic Metabolic Pathways (ISBN: 978-1-4939-7294-4), pages: 185-201, 2018,

Type: Book chapter (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: http://dx.doi.org/10.1007/978-1-4939-7295-1_12

 

Computational Methods to Assess the Production Potential of Bio-Based Chemicals

Campodonico Alt, Miguel Angel ; Sukumara, Sumesh ; Feist, Adam ; Herrgard, Markus
part of: Synthetic Metabolic Pathways (ISBN: 978-1-4939-7294-4), pages: 97-116, 2018,

Type: Book chapter (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: http://dx.doi.org/10.1007/978-1-4939-7295-1_7

 

A Capture-SELEX Strategy for Multiplexed Selection of RNA Aptamers Against Small Molecules

Lauridsen, Lasse Holm ; Døssing, Holger ; Long, Katherine ; Nielsen, Alex Toftgaard
part of: Synthetic Metabolic Pathways (ISBN: 978-1-4939-7294-4), pages: 291-306, 2018,

Type: Book chapter (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: http://dx.doi.org/10.1007/978-1-4939-7295-1_18

 

Multiplex Genome Editing in Escherichia coli

Ingemann Jensen, Sheila ; Nielsen, Alex Toftgaard
part of: Synthetic Metabolic Pathways (ISBN: 978-1-4939-7294-4), pages: 119-129, 2018,

Type: Book chapter (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: http://dx.doi.org/10.1007/978-1-4939-7295-1_8

 

Parts Characterization for Tunable Protein Expression

Klausen, Michael Schantz ; Sommer, Morten Otto Alexander
part of: Synthetic Metabolic Pathways (ISBN: 978-1-4939-7294-4), pages: 3-14, 2018,

Type: Book chapter (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: http://dx.doi.org/10.1007/978-1-4939-7295-1_1

 

Selection of Highly Expressed Gene Variants in Escherichia coli Using Translationally Coupled Antibiotic Selection Markers

Rennig, Maja ; Daley, Daniel O. ; Nørholm, Morten
part of: Synthetic Metabolic Pathways (ISBN: 978-1-4939-7294-4), pages: 259-268, 2018,

Type: Book chapter (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: http://dx.doi.org/10.1007/978-1-4939-7295-1_16

 

CRISPR-Cas9 Toolkit for Actinomycete Genome Editing

Tong, Yaojun ; Robertsen, Helene Lunde ; Blin, Kai ; Weber, Tilmann ; Lee, Sang Yup
part of: Synthetic Metabolic Pathways (ISBN: 978-1-4939-7294-4), pages: 163-184, 2018,

Type: Book chapter (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: http://dx.doi.org/10.1007/978-1-4939-7295-1_11

 

Bacterial Genome Editing Strategy for Control of Transcription and Protein Stability

Lauritsen, Ida ; Martinez, Virginia ; Ronda, Carlotta ; Nielsen, Alex Toftgaard ; Nørholm, Morten
part of: Synthetic Metabolic Pathways (ISBN: 978-1-4939-7294-4), pages: 27-37, 2018,

Type: Book chapter (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: http://dx.doi.org/10.1007/978-1-4939-7295-1_3

 

Synthetic Metabolic Pathways

Jensen, Michael Krogh (Editor) ; Keasling, Jay (Editor)
Publisher: Springer, (ISBN: 978-1-4939-7294-4), pages: 354

Type: Book (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: http://dx.doi.org/10.1007/978-1-4939-7295-1

2017
 

Engineer medium and feed for modulating N-glycosylation of recombinant protein production in CHO cell culture

Fan, Yuzhou ; Kildegaard, Helene Faustrup ; Andersen, Mikael Rørdam
part of: Heterologous Protein Production in CHO cells, pages: 209-226, 2016, Springer,

Type: Book chapter (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1007/978-1-4939-6972-2_14

 

Application of CRISPR/Cas9 Genome Editing to Improve Recombinant Protein Production in CHO Cells

Grav, Lise Marie ; Julie la Cour Karottki, Karen ; Lee, Jae Seong ; Kildegaard, Helene Faustrup
part of: Heterologous Protein Production in CHO cells, pages: 101-118, 2017, Springer,

Type: Book chapter (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1007/978-1-4939-6972-2_7

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Physicochemical characterization of the yeast cells and the waste lignocellulosic particles in the immobilization process for ethanol production

Agudelo-Escobar, Lina María ; Mussatto, Solange I. ; Peñuela, Mariana ; Teixeira, José António
part of: Yeast - Industrial Applications (ISBN: 978-953-51-3599-9), pages: 229-247, 2017, InTechOpen,

Type: Book chapter (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.5772/intechopen.70129

2016
 

Genome-Scale Models

Bergdahl, Basti ; Sonnenschein, Nikolaus ; Machado, Daniel ; Herrgard, Markus ; Förster, Jochen
part of: Fundamental Bioengineering (ISBN: 9783527336746), pages: 143-182, 2015, Wiley-VCH, Weinheim, Germany

Type: Book chapter (Peer reviewed)

Status: Published     |    Year: 2016     |    DOI: http://dx.doi.org/10.1002/9783527697441.ch06

 

Bioinformatics Tools for the Discovery of New Nonribosomal Peptides

Leclère, Valérie ; Weber, Tilmann ; Jacques, Philippe ; Pupin, Maude
part of: Nonribosomal Peptide and Polyketide Biosynthesis (ISBN: 978-1-4939-3373-0), pages: 209-232, 2016, Springer,

Type: Book chapter (Peer reviewed)

Status: Published     |    Year: 2016     |    DOI: http://dx.doi.org/10.1007/978-1-4939-3375-4_14

 

Isolation and Cultivation of Anaerobes

Aragão Börner, Rosa
part of: Advances in Biochemical Engineering/Biotechnology, pages: 35-53, 2016, Springer,

Type: Book chapter (Peer reviewed)

Status: Published     |    Year: 2016     |    DOI: http://dx.doi.org/10.1007/10_2016_1

 

Codon optimizing for increased membrane protein production

Mirzadeh, K. ; Toddo, S. ; Nørholm, Morten ; Daley, Daniel O.
part of: Heterologous Expression of Membrane Proteins (ISBN: 978-1-4939-3635-9), pages: 53-61, 2016, Springer,

Type: Book chapter (Peer reviewed)

Status: Published     |    Year: 2016     |    DOI: http://dx.doi.org/10.1007/978-1-4939-3637-3_4

2015
 

Uracil Excision for Assembly of Complex Pathways

Cavaleiro, Mafalda ; Nielsen, Morten Thrane ; Kim, Se Hyeuk ; Seppala, Susanna ; Nørholm, Morten
part of: Springer Protocols Handbooks, 2015, Humana Press,

Type: Book chapter (Peer reviewed)

Status: Published     |    Year: 2015     |    DOI: http://dx.doi.org/10.1007/8623_2015_133

2014
 

Identification of Bacterial Small RNAs by RNA Sequencing

Gómez Lozano, María ; Marvig, Rasmus Lykke ; Molin, Søren ; Long, Katherine
part of: Pseudomonas Methods and Protocols (ISBN: ISBN 978-1-4939-0472-3), pages: 433-456, 2014, Springer Science+Business Media,

Type: Book chapter (Peer reviewed)

Status: Published     |    Year: 2014     |    DOI: http://dx.doi.org/10.1007/978-1-4939-0473-0_34

2013
 

Targeted Metabolic Engineering Guided by Computational Analysis of Single-Nucleotide Polymorphisms (SNPs)

Udatha, D B R K Gupta ; Rasmussen, Simon ; Sicheritz-Pontén, Thomas ; Panagiotou, Gianni
part of: Systems Metabolic Engineering : Methods and Protocols (ISBN: 978-1-62703-298-8), pages: 409-428, 2013, Springer,

Type: Book chapter (Peer reviewed)

Status: Published     |    Year: 2013     |    DOI: http://dx.doi.org/10.1007/978-1-62703-299-5_20

2012
 

From Genome Sequence to Taxonomy - A Skeptic’s View

Özen, Asli Ismihan ; Vesth, Tammi Camilla ; Ussery, David
part of: The Prokaryotes, 2012, Springer, 2012

Type: Book chapter (Peer reviewed)

Status: Published     |    Year: 2012     |    DOI: http://dx.doi.org/10.1007/978-3-642-30194-0_11

2011
 

Ecological and Clinical Consequences of Antibiotic Subsistence by Environmental Microbes

Dantas, Gautam ; Sommer, Morten Otto Alexander
part of: Antimicrobial Resistance in the Environment (ISBN: 9780470905425), pages: 29-41, 2017, Wiley,

Type: Book chapter (Peer reviewed)

Status: Published     |    Year: 2011     |    DOI: http://dx.doi.org/10.1002/9781118156247.ch4