Publications

Publikationer rss feed

2018
 

Selecting of a cytochrome P450cam SeSaM library with 3-chloroindole and endosulfan – Identification of mutants that dehalogenate 3-chloroindole

Kammoonah, Shaima ; Prasad, Brinda ; Balaraman, Priyadarshini ; Mundhada, Hemanshu ; Schwaneberg, Ulrich ; Plettner, Erika
in journal: Biochimica et Biophysica Acta - Proteins and Proteomics (ISSN: 1570-9639) (DOI: http://dx.doi.org/10.1016/j.bbapap.2017.09.006), vol: 1866, issue: 1, pages: 68-79, 2018

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: http://dx.doi.org/10.1016/j.bbapap.2017.09.006

 

Production and physicochemical properties of carboxymethyl cellulose films enriched with spent coffee grounds polysaccharides

Ballesteros, Lina F. ; Cerqueira, Miguel A. ; Teixeira, Jose A. ; Mussatto, Solange I.
in journal: International Journal of Biological Macromolecules (ISSN: 0141-8130) (DOI: http://dx.doi.org/10.1016/j.ijbiomac.2017.08.060), vol: 106, pages: 647-655, 2018

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: http://dx.doi.org/10.1016/j.ijbiomac.2017.08.060

 

Underground metabolism: network-level perspective and biotechnological potential

Notebaart, Richard A ; Kintses, Bálint ; Feist, Adam ; Papp, Balázs
in journal: Current Opinion in Biotechnology (ISSN: 0958-1669) (DOI: http://dx.doi.org/10.1016/j.copbio.2017.07.015), vol: 49, pages: 108-114, 2018

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: http://dx.doi.org/10.1016/j.copbio.2017.07.015

 

Xylitol production by Debaryomyces hansenii and Candida guilliermondii from rapeseed straw hemicellulosic hydrolysate

López-Linares, Juan Carlos ; Romero, Inmaculada ; Cara, Cristobal ; Castro, Eulogio ; Mussatto, Solange I.
in journal: Bioresource Technology (ISSN: 0960-8524) (DOI: http://dx.doi.org/10.1016/j.biortech.2017.09.139), vol: 247, pages: 736-743, 2018

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: http://dx.doi.org/10.1016/j.biortech.2017.09.139

 

Serine/Threonine protein kinases from bacteria, archaea and eukarya share a common evolutionary origin deeply rooted in the tree of life

Stancik, Ivan Andreas ; Šestak, Martin Sebastijan ; Ji, Boyang ; Axelson-Fisk, Marina ; Franjevic, Damjan ; Jers, Carsten ; Domazet-Lošo, Tomislav ; Mijakovic, Ivan
in journal: Journal of Molecular Biology (ISSN: 0022-2836) (DOI: http://dx.doi.org/10.1016/j.jmb.2017.11.004), vol: 430, issue: 1, pages: 27-32, 2018

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: http://dx.doi.org/10.1016/j.jmb.2017.11.004

 

Sugarcane bagasse hydrolysate as a potential feedstock for red pigment production by Monascus ruber

Terán Hilares, Ruly ; de Souza, Rebeca Andrade ; Marcelino, Paulo Franco ; da Silva, Silvio Silvério ; Dragone, Giuliano ; Mussatto, Solange I. ; Santos, Júlio César
in journal: Food Chemistry (ISSN: 0308-8146) (DOI: http://dx.doi.org/10.1016/j.foodchem.2017.11.111), vol: 245, pages: 786-791, 2018

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: http://dx.doi.org/10.1016/j.foodchem.2017.11.111

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Drug-Driven Phenotypic Convergence Supports Rational Treatment Strategies of Chronic Infections

Imamovic, Lejla ; Ellabaan, Mostafa M Hashim ; Machado, Ana Manuel ; Citterio, Linda ; Wulff, Tune ; Molin, Søren ; Johansen, Helle Krogh ; Sommer, Morten Otto Alexander
in journal: Cell (ISSN: 0092-8674) (DOI: http://dx.doi.org/10.1016/j.cell.2017.12.012), 2018

Type: Journal article (Peer reviewed)

Status: Accepted/In press     |    Year: 2018     |    DOI: http://dx.doi.org/10.1016/j.cell.2017.12.012

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Correction to: Industrial antifoam agents impair ethanol fermentation and induce stress responses in yeast cells

Nielsen, Jens Christian Frøslev ; Senne de Oliveira Lino, Felipe ; Rasmussen, Thomas Gundelund ; Thykær, Jette ; Workman, Christopher ; Basso, Thiago Olitta
in journal: Applied Microbiology and Biotechnology (ISSN: 0175-7598) (DOI: http://dx.doi.org/10.1007/s00253-017-8643-4), vol: 102, issue: 1, pages: 513-513, 2018

Type: Comment/debate (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: http://dx.doi.org/10.1007/s00253-017-8643-4

 

TARSyn: Tunable Antibiotic Resistance Devices Enabling Bacterial Synthetic Evolution and Protein Production

Rennig, Maja ; Martinez, Virginia ; Mirzadeh, Kiavash ; Dunas, Finn ; Röjsäter, Belinda ; Daley, Daniel O ; Nørholm, Morten
in journal: A C S Synthetic Biology (ISSN: 2161-5063) (DOI: http://dx.doi.org/10.1021/acssynbio.7b00200), 2018

Type: Journal article (Peer reviewed)

Status: Accepted/In press     |    Year: 2018     |    DOI: http://dx.doi.org/10.1021/acssynbio.7b00200

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The Global Acetylome of the Human Pathogen Vibrio cholerae V52 Reveals Lysine Acetylation of Major Transcriptional Regulators

Jers, Carsten ; Ravikumar, Vaishnavi ; Lezyk, Mateusz Jakub ; Sultan, Abida ; Sjöling, Åsa ; Wai, Sun N. ; Mijakovic, Ivan
in journal: Frontiers in Cellular and Infection Microbiology (ISSN: 2235-2988) (DOI: http://dx.doi.org/10.3389/fcimb.2017.00537), vol: 7, 2018

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: http://dx.doi.org/10.3389/fcimb.2017.00537

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Complete Genome Sequence of Escherichia coli Strain WG5

Imamovic, Lejla ; Misiakou, Maria-Anna ; van der Helm, Eric ; Panagiotou, Gianni ; Muniesa, Maite ; Sommer, Morten Otto Alexander
in journal: Genome Announcements (ISSN: 2169-8287) (DOI: http://dx.doi.org/10.1128/genomeA.01403-17), vol: 6, issue: 2, 2018

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: http://dx.doi.org/10.1128/genomeA.01403-17

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Dissecting the genetic and metabolic mechanisms of adaptation to the knockout of a major metabolic enzyme in Escherichia coli

Long, Christopher P. ; Gonzalez, Jacqueline E. ; Feist, Adam ; Palsson, Bernhard ; Antoniewicz, Maciek R.
in journal: Proceedings of the National Academy of Sciences of the United States of America (ISSN: 0027-8424) (DOI: http://dx.doi.org/10.1073/pnas.1716056115), vol: 115, issue: 1, pages: 222-227, 2018

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: http://dx.doi.org/10.1073/pnas.1716056115

 

Using titer and titer normalized to confluence are complementary strategies for obtaining Chinese hamster ovary cell lines with high volumetric productivity of etanercept

Pristovsek, Nusa ; Hansen, Henning Gram ; Sergeeva, Daria ; Borth, Nicole ; Min Lee, Gyun ; Andersen, Mikael Rørdam ; Kildegaard, Helene Faustrup
in journal: Biotechnology Journal (ISSN: 1860-6768) (DOI: http://dx.doi.org/10.1002/biot.201700216), 2018

Type: Journal article (Peer reviewed)

Status: Accepted/In press     |    Year: 2018     |    DOI: http://dx.doi.org/10.1002/biot.201700216

 

EasyCloneYALI: CRISPR/Cas9-based synthetic toolbox for engineering of the yeast Yarrowia lipolytica

Holkenbrink, Carina ; Dam, Marie Inger ; Kildegaard, Kanchana Rueksomtawin ; Beder, Johannes ; Dahlin, Jonathan ; Belda, David Doménech ; Borodina, Irina
in journal: Biotechnology Journal (ISSN: 1860-6768) (DOI: http://dx.doi.org/10.1002/biot.201700543), 2018

Type: Journal article (Peer reviewed)

Status: Accepted/In press     |    Year: 2018     |    DOI: http://dx.doi.org/10.1002/biot.201700543

 

Modeling the multi-scale mechanisms of macromolecular resource allocation

Yang, Laurence ; Yurkovich, James T ; King, Zachary A ; Palsson, Bernhard
in journal: Current Opinion in Microbiology (ISSN: 1369-5274) (DOI: http://dx.doi.org/10.1016/j.mib.2018.01.002), vol: 45, pages: 8-15, 2018

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: http://dx.doi.org/10.1016/j.mib.2018.01.002

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Biochemical mechanisms determine the functional compatibility of heterologous genes

Porse, Andreas ; Schou, Thea S. ; Munck, Christian ; Ellabaan, Mostafa M Hashim ; Sommer, Morten Otto Alexander
in journal: Nature Communications (ISSN: 2041-1723) (DOI: http://dx.doi.org/10.1038/s41467-018-02944-3), vol: 9, 2018

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: http://dx.doi.org/10.1038/s41467-018-02944-3

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Hijacking CRISPR-Cas for high-throughput bacterial metabolic engineering: advances and prospects

Mougiakos, Ioannis ; Bosma, Elleke Fenna ; Ganguly , Joyshree ; van der Oost, John ; van Kranenburg, Richard
in journal: Current Opinion in Biotechnology (ISSN: 0958-1669) (DOI: http://dx.doi.org/10.1016/j.copbio.2018.01.002), vol: 50, pages: 146-157, 2018

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: http://dx.doi.org/10.1016/j.copbio.2018.01.002

 

Impact of CHO Metabolism on Cell Growth and Protein Production: An Overview of Toxic and Inhibiting Metabolites and Nutrients

Pereira, Sara ; Kildegaard, Helene Faustrup ; Andersen, Mikael Rørdam
in journal: Biotechnology Journal (Online) (ISSN: 1860-7314) (DOI: http://dx.doi.org/10.1002/biot.201700499), 2018

Type: Journal article (Peer reviewed)

Status: Accepted/In press     |    Year: 2018     |    DOI: http://dx.doi.org/10.1002/biot.201700499

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ClusterCAD: a computational platform for type I modular polyketide synthase design

Eng, Clara H. ; Backman, Tyler W. H. ; Bailey, Constance B. ; Magnan, Christophe ; Martin, Hector Garcia ; Katz, Leonard ; Baldi, Pierre ; Keasling, Jay
in journal: Nucleic Acids Research (ISSN: 0305-1048) (DOI: http://dx.doi.org/10.1093/nar/gkx893), vol: 46, issue: D1, pages: D509-D515, 2018

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: http://dx.doi.org/10.1093/nar/gkx893

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Constraining genome-scale models to represent the bow tie structure of metabolism for 13C metabolic flux analysis

Backman, Tyler W.H. ; Ando, David ; Singh, Jahnavi ; Keasling, Jay ; Martín, Héctor García
in journal: Metabolites (ISSN: 2218-1989) (DOI: http://dx.doi.org/10.3390/metabo8010003), vol: 8, issue: 1, 2018

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: http://dx.doi.org/10.3390/metabo8010003

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Isolation and characterization of novel mutations in the pSC101 origin that increase copy number

Thompson, Mitchell G. ; Sedaghatian, Nima ; Barajas, Jesus F. ; Wehrs, Maren ; Bailey, Constance B. ; Kaplan, Nurgul ; Hillson, Nathan J. ; Mukhopadhyay, Aindrila ; Keasling, Jay
in journal: Scientific Reports (ISSN: 2045-2322) (DOI: http://dx.doi.org/10.1038/s41598-018-20016-w), vol: 8, 2018

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: http://dx.doi.org/10.1038/s41598-018-20016-w

 

Universal Alternative Splicing of Noncoding Exons

Deveson, Ira W ; Brunck, Marion E ; Blackburn, James ; Tseng, Elizabeth ; Hon, Ting ; Clark, Tyson A ; Clark, Michael B ; Crawford, Joanna ; Dinger, Marcel E ; Nielsen, Lars Keld ; Mattick, John S ; Mercer, Tim R
in journal: Cell Systems (ISSN: 2405-4712) (DOI: http://dx.doi.org/10.1016/j.cels.2017.12.005), 2018

Type: Journal article (Peer reviewed)

Status: Accepted/In press     |    Year: 2018     |    DOI: http://dx.doi.org/10.1016/j.cels.2017.12.005

 

"It's a gut feeling" - Escherichia coli biofilm formation in the gastrointestinal tract environment

Rossi, Elio ; Cimdins, Annika ; Luthje, Petra ; Brauner, Annelie ; Sjoling, Asa ; Landini, Paolo ; Romling, Ute
in journal: Critical Reviews in Microbiology (ISSN: 1040-841X) (DOI: http://dx.doi.org/10.1080/1040841X.2017.1303660), vol: 44, issue: 1, 2018

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: http://dx.doi.org/10.1080/1040841X.2017.1303660

 

RNA-Seq Highlights High Clonal Variation in Monoclonal Antibody Producing CHO Cells

Orellana, Camila A. ; Marcellin, Esteban ; Palfreyman, Robin W. ; Munro, Trent P. ; Gray, Peter P. ; Nielsen, Lars Keld
in journal: Biotechnology Journal (ISSN: 1860-6768) (DOI: http://dx.doi.org/10.1002/biot.201700231), 2018

Type: Journal article (Peer reviewed)

Status: Accepted/In press     |    Year: 2018     |    DOI: http://dx.doi.org/10.1002/biot.201700231

 

Multiplexed CRISPR/Cas9 Genome Editing and Gene Regulation Using Csy4 in Saccharomyces cerevisiae

Ferreira, Raphael ; Skrekas, Christos ; Nielsen, Jens ; David, Florian
in journal: A C S Synthetic Biology (ISSN: 2161-5063) (DOI: http://dx.doi.org/10.1021/acssynbio.7b00259), vol: 7, issue: 1, pages: 10-15, 2018

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: http://dx.doi.org/10.1021/acssynbio.7b00259