Publications

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2018
 

Selecting of a cytochrome P450cam SeSaM library with 3-chloroindole and endosulfan – Identification of mutants that dehalogenate 3-chloroindole

Kammoonah, Shaima ; Prasad, Brinda ; Balaraman, Priyadarshini ; Mundhada, Hemanshu ; Schwaneberg, Ulrich ; Plettner, Erika
in journal: Biochimica et Biophysica Acta - Proteins and Proteomics (ISSN: 1570-9639) (DOI: http://dx.doi.org/10.1016/j.bbapap.2017.09.006), vol: 1866, issue: 1, pages: 68-79, 2018

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: http://dx.doi.org/10.1016/j.bbapap.2017.09.006

 

Production and physicochemical properties of carboxymethyl cellulose films enriched with spent coffee grounds polysaccharides

Ballesteros, Lina F. ; Cerqueira, Miguel A. ; Teixeira, Jose A. ; Mussatto, Solange I.
in journal: International Journal of Biological Macromolecules (ISSN: 0141-8130) (DOI: http://dx.doi.org/10.1016/j.ijbiomac.2017.08.060), vol: 106, pages: 647-655, 2018

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: http://dx.doi.org/10.1016/j.ijbiomac.2017.08.060

 

Underground metabolism: network-level perspective and biotechnological potential

Notebaart, Richard A ; Kintses, Bálint ; Feist, Adam ; Papp, Balázs
in journal: Current Opinion in Biotechnology (ISSN: 0958-1669) (DOI: http://dx.doi.org/10.1016/j.copbio.2017.07.015), vol: 49, pages: 108-114, 2018

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: http://dx.doi.org/10.1016/j.copbio.2017.07.015

 

Xylitol production by Debaryomyces hansenii and Candida guilliermondii from rapeseed straw hemicellulosic hydrolysate

López-Linares, Juan Carlos ; Romero, Inmaculada ; Cara, Cristobal ; Castro, Eulogio ; Mussatto, Solange I.
in journal: Bioresource Technology (ISSN: 0960-8524) (DOI: http://dx.doi.org/10.1016/j.biortech.2017.09.139), vol: 247, pages: 736-743, 2018

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: http://dx.doi.org/10.1016/j.biortech.2017.09.139

 

Serine/Threonine protein kinases from bacteria, archaea and eukarya share a common evolutionary origin deeply rooted in the tree of life

Stancik, Ivan Andreas ; Šestak, Martin Sebastijan ; Ji, Boyang ; Axelson-Fisk, Marina ; Franjevic, Damjan ; Jers, Carsten ; Domazet-Lošo, Tomislav ; Mijakovic, Ivan
in journal: Journal of Molecular Biology (ISSN: 0022-2836) (DOI: http://dx.doi.org/10.1016/j.jmb.2017.11.004), vol: 430, issue: 1, pages: 27-32, 2018

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: http://dx.doi.org/10.1016/j.jmb.2017.11.004

 

An Adaptive Laboratory Evolution Method to Accelerate Autotrophic Metabolism

Zhang, Tian ; Tremblay, Pier-Luc
part of: Synthetic Metabolic Pathways (ISBN: 978-1-4939-7294-4), pages: 149-161, 2018, Springer,

Type: Book chapter (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: http://dx.doi.org/10.1007/978-1-4939-7295-1_10

 

Design, Engineering, and Characterization of Prokaryotic Ligand-Binding Transcriptional Activators as Biosensors in Yeast

Ambri, Francesca ; Snoek, Tim ; Skjødt, Mette Louise ; Jensen, Michael Krogh ; Keasling, Jay
part of: Synthetic Metabolic Pathways (ISBN: 978-1-4939-7294-4), pages: 269-290, 2018, Springer,

Type: Book chapter (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: http://dx.doi.org/10.1007/978-1-4939-7295-1_17

 

Assembly and Multiplex Genome Integration of Metabolic Pathways in Yeast Using CasEMBLR

Jakociunas, Tadas ; Damgaard Jensen, Emil ; Jensen, Michael Krogh ; Keasling, Jay
part of: Synthetic Metabolic Pathways (ISBN: 978-1-4939-7294-4), pages: 185-201, 2018,

Type: Book chapter (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: http://dx.doi.org/10.1007/978-1-4939-7295-1_12

 

Computational Methods to Assess the Production Potential of Bio-Based Chemicals

Campodonico Alt, Miguel Angel ; Sukumara, Sumesh ; Feist, Adam ; Herrgard, Markus
part of: Synthetic Metabolic Pathways (ISBN: 978-1-4939-7294-4), pages: 97-116, 2018,

Type: Book chapter (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: http://dx.doi.org/10.1007/978-1-4939-7295-1_7

 

A Capture-SELEX Strategy for Multiplexed Selection of RNA Aptamers Against Small Molecules

Lauridsen, Lasse Holm ; Døssing, Holger ; Long, Katherine ; Nielsen, Alex Toftgaard
part of: Synthetic Metabolic Pathways (ISBN: 978-1-4939-7294-4), pages: 291-306, 2018,

Type: Book chapter (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: http://dx.doi.org/10.1007/978-1-4939-7295-1_18

 

Multiplex Genome Editing in Escherichia coli

Ingemann Jensen, Sheila ; Nielsen, Alex Toftgaard
part of: Synthetic Metabolic Pathways (ISBN: 978-1-4939-7294-4), pages: 119-129, 2018,

Type: Book chapter (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: http://dx.doi.org/10.1007/978-1-4939-7295-1_8

 

Parts Characterization for Tunable Protein Expression

Klausen, Michael Schantz ; Sommer, Morten Otto Alexander
part of: Synthetic Metabolic Pathways (ISBN: 978-1-4939-7294-4), pages: 3-14, 2018,

Type: Book chapter (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: http://dx.doi.org/10.1007/978-1-4939-7295-1_1

 

Selection of Highly Expressed Gene Variants in Escherichia coli Using Translationally Coupled Antibiotic Selection Markers

Rennig, Maja ; Daley, Daniel O. ; Nørholm, Morten
part of: Synthetic Metabolic Pathways (ISBN: 978-1-4939-7294-4), pages: 259-268, 2018,

Type: Book chapter (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: http://dx.doi.org/10.1007/978-1-4939-7295-1_16

 

CRISPR-Cas9 Toolkit for Actinomycete Genome Editing

Tong, Yaojun ; Robertsen, Helene Lunde ; Blin, Kai ; Weber, Tilmann ; Lee, Sang Yup
part of: Synthetic Metabolic Pathways (ISBN: 978-1-4939-7294-4), pages: 163-184, 2018,

Type: Book chapter (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: http://dx.doi.org/10.1007/978-1-4939-7295-1_11

 

Bacterial Genome Editing Strategy for Control of Transcription and Protein Stability

Lauritsen, Ida ; Martinez, Virginia ; Ronda, Carlotta ; Nielsen, Alex Toftgaard ; Nørholm, Morten
part of: Synthetic Metabolic Pathways (ISBN: 978-1-4939-7294-4), pages: 27-37, 2018,

Type: Book chapter (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: http://dx.doi.org/10.1007/978-1-4939-7295-1_3

 

Synthetic Metabolic Pathways

Jensen, Michael Krogh (Editor) ; Keasling, Jay (Editor)
Publisher: Springer, (ISBN: 978-1-4939-7294-4), pages: 354

Type: Book (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: http://dx.doi.org/10.1007/978-1-4939-7295-1

 

Sugarcane bagasse hydrolysate as a potential feedstock for red pigment production by Monascus ruber

Terán Hilares, Ruly ; de Souza, Rebeca Andrade ; Marcelino, Paulo Franco ; da Silva, Silvio Silvério ; Dragone, Giuliano ; Mussatto, Solange I. ; Santos, Júlio César
in journal: Food Chemistry (ISSN: 0308-8146) (DOI: http://dx.doi.org/10.1016/j.foodchem.2017.11.111), vol: 245, pages: 786-791, 2018

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: http://dx.doi.org/10.1016/j.foodchem.2017.11.111

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Drug-Driven Phenotypic Convergence Supports Rational Treatment Strategies of Chronic Infections

Imamovic, Lejla ; Ellabaan, Mostafa M Hashim ; Machado, Ana Manuel ; Citterio, Linda ; Wulff, Tune ; Molin, Søren ; Johansen, Helle Krogh ; Sommer, Morten Otto Alexander
in journal: Cell (ISSN: 0092-8674) (DOI: http://dx.doi.org/10.1016/j.cell.2017.12.012), 2018

Type: Journal article (Peer reviewed)

Status: Accepted/In press     |    Year: 2018     |    DOI: http://dx.doi.org/10.1016/j.cell.2017.12.012

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Correction to: Industrial antifoam agents impair ethanol fermentation and induce stress responses in yeast cells

Nielsen, Jens Christian Frøslev ; Senne de Oliveira Lino, Felipe ; Rasmussen, Thomas Gundelund ; Thykær, Jette ; Workman, Christopher ; Basso, Thiago Olitta
in journal: Applied Microbiology and Biotechnology (ISSN: 0175-7598) (DOI: http://dx.doi.org/10.1007/s00253-017-8643-4), vol: 102, issue: 1, pages: 513-513, 2018

Type: Comment/debate (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: http://dx.doi.org/10.1007/s00253-017-8643-4

 

TARSyn: Tunable Antibiotic Resistance Devices Enabling Bacterial Synthetic Evolution and Protein Production

Rennig, Maja ; Martinez, Virginia ; Mirzadeh, Kiavash ; Dunas, Finn ; Röjsäter, Belinda ; Daley, Daniel O ; Nørholm, Morten
in journal: A C S Synthetic Biology (ISSN: 2161-5063) (DOI: http://dx.doi.org/10.1021/acssynbio.7b00200), 2018

Type: Journal article (Peer reviewed)

Status: Accepted/In press     |    Year: 2018     |    DOI: http://dx.doi.org/10.1021/acssynbio.7b00200

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The Global Acetylome of the Human Pathogen Vibrio cholerae V52 Reveals Lysine Acetylation of Major Transcriptional Regulators

Jers, Carsten ; Ravikumar, Vaishnavi ; Lezyk, Mateusz Jakub ; Sultan, Abida ; Sjöling, Åsa ; Wai, Sun N. ; Mijakovic, Ivan
in journal: Frontiers in Cellular and Infection Microbiology (ISSN: 2235-2988) (DOI: http://dx.doi.org/10.3389/fcimb.2017.00537), vol: 7, 2018

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: http://dx.doi.org/10.3389/fcimb.2017.00537

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Complete Genome Sequence of Escherichia coli Strain WG5

Imamovic, Lejla ; Misiakou, Maria-Anna ; van der Helm, Eric ; Panagiotou, Gianni ; Muniesa, Maite ; Sommer, Morten Otto Alexander
in journal: Genome Announcements (ISSN: 2169-8287) (DOI: http://dx.doi.org/10.1128/genomeA.01403-17), vol: 6, issue: 2, 2018

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: http://dx.doi.org/10.1128/genomeA.01403-17

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Dissecting the genetic and metabolic mechanisms of adaptation to the knockout of a major metabolic enzyme in Escherichia coli

Long, Christopher P. ; Gonzalez, Jacqueline E. ; Feist, Adam ; Palsson, Bernhard ; Antoniewicz, Maciek R.
in journal: Proceedings of the National Academy of Sciences of the United States of America (ISSN: 0027-8424) (DOI: http://dx.doi.org/10.1073/pnas.1716056115), vol: 115, issue: 1, pages: 222-227, 2018

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: http://dx.doi.org/10.1073/pnas.1716056115

2017
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VARIANTS OF ACETYLSEROTONIN O-METHYLTRANSFERASE AND USES THEREOF

Luo, Hao (Inventor)
Patent no.: WO2017202897, Date: 30-11-2017

Type: Patent

Status: Published     |    Year: 2017

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Genome-wide analysis of E. coli cell-gene interactions

Cardinale, Stefano ; Cambray, G.
in journal: BMC Systems Biology (ISSN: 1752-0509) (DOI: http://dx.doi.org/10.1186/s12918-017-0494-1), vol: 11, issue: 1, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1186/s12918-017-0494-1