Publications

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2018
 

Selecting of a cytochrome P450cam SeSaM library with 3-chloroindole and endosulfan – Identification of mutants that dehalogenate 3-chloroindole

Kammoonah, Shaima ; Prasad, Brinda ; Balaraman, Priyadarshini ; Mundhada, Hemanshu ; Schwaneberg, Ulrich ; Plettner, Erika
in: Biochimica et Biophysica Acta - Proteins and Proteomics (ISSN: 1570-9639), vol: 1866, issue: 1, pages: 68-79, 2018

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: http://dx.doi.org/10.1016/j.bbapap.2017.09.006

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Integrated 1st and 2nd generation sugarcane bio-refinery for jet fuel production in Brazil: Techno-economic and greenhouse gas emissions assessment

Santos, Catarina I. ; Silva, Constança C. ; Mussatto, Solange I. ; Osseweijer, Patricia ; van der Wielen, Luuk A. M. ; Posada, John A.
in: Renewable Energy (ISSN: 0960-1481), vol: 129, pages: 733-747, 2018

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: http://dx.doi.org/10.1016/j.renene.2017.05.011

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Combination of phage and Gram-positive bacterial display of human antibody repertoires enables isolation of functional high affinity binders

Hu, Francis Jingxin ; Volk, Anna-Luisa ; Persson, Helena ; Säll, Anna ; Borrebaeck, Carl ; Uhlén, Mathias ; Rockberg, Johan
in: New Biotechnology (ISSN: 1871-6784), vol: 45, pages: 80-88, 2018

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: http://dx.doi.org/10.1016/j.nbt.2017.07.011

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Production and physicochemical properties of carboxymethyl cellulose films enriched with spent coffee grounds polysaccharides

Ballesteros, Lina F. ; Cerqueira, Miguel A. ; Teixeira, Jose A. ; Mussatto, Solange I.
in: International Journal of Biological Macromolecules (ISSN: 0141-8130), vol: 106, pages: 647-655, 2018

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: http://dx.doi.org/10.1016/j.ijbiomac.2017.08.060

 

Underground metabolism: network-level perspective and biotechnological potential

Notebaart, Richard A ; Kintses, Bálint ; Feist, Adam ; Papp, Balázs
in: Current Opinion in Biotechnology (ISSN: 0958-1669), vol: 49, pages: 108-114, 2018

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: http://dx.doi.org/10.1016/j.copbio.2017.07.015

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BacHBerry:: BACterial Hosts for production of Bioactive phenolics from bERRY fruits

Dudnik, Alexey ; Almeida, A. Filipa ; Andrade, Ricardo ; Avila, Barbara ; Bañados, Pilar ; Barbay, Diane ; Bassard, Jean Etienne ; Benkoulouche, Mounir ; Bott, Michael ; Braga, Adelaide ; Breitel, Dario ; Brennan, Rex ; Bulteau, Laurent ; Chanforan, Celine ; Costa, Inês ; Costa, Rafael S. ; Doostmohammadi, Mahdi ; Faria, Nuno ; Feng, Chengyong ; Fernandes, Armando ; Ferreira, Patricia ; Ferro, Roberto ; Foito, Alexandre ; Freitag, Sabine ; Garcia, Gonçalo ; Gaspar, Paula ; Godinho-Pereira, Joana ; Hamberger, Björn ; Hartmann, András ; Heider, Harald ; Jardim, Carolina ; Julien-Laferriere, Alice ; Kallscheuer, Nicolai ; Kerbe, Wolfgang ; Kuipers, Oscar P. ; Li, Shanshan ; Love, Nicola ; Marchetti-Spaccamela, Alberto ; Marienhagen, Jan ; Martin, Cathie ; Mary, Arnaud ; Mazurek, Vincent ; Meinhart, Camillo ; Sevillano, David Méndez ; Menezes, Regina ; Naesby, Michael ; Nørholm, Morten ; Okkels, Finn T. ; Oliveira, Joana ; Ottens, Marcel ; Parrot, Delphine ; Pei, Lei ; Rocha, Isabel ; Rosado-Ramos, Rita ; Rousseau, Caroline ; Sagot, Marie France ; Dos Santos, Claudia Nunes ; Schmidt, Markus ; Shelenga, Tatiana ; Shepherd, Louise ; Silva, Ana Rita ; da Silva, Marcelo Henriques ; Simon, Olivier ; Stahlhut, Steen Gustav ; Solopova, Ana ; Sorokin, Artem ; Stewart, Derek ; Stougie, Leen ; Su, Shang ; Thole, Vera ; Tikhonova, Olga ; Trick, Martin ; Vain, Philippe ; Veríssimo, André ; Vila-Santa, Ana ; Vinga, Susana ; Vogt, Michael ; Wang, Liangsheng ; Wang, Lijin ; Wei, Wei ; Youssef, Sandra ; Neves, Ana Rute ; Förster, Jochen
in: Phytochemistry Reviews (ISSN: 1568-7767), vol: 17, issue: 2, pages: 291-326, 2018

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: http://dx.doi.org/10.1007/s11101-017-9532-2

 

DCEO Biotechnology: Tools To Design, Construct, Evaluate, and Optimize the Metabolic Pathway for Biosynthesis of Chemicals

Chen, Xiulai ; Gao, Cong ; Guo, Liang ; Hu, Guipeng ; Luo, Qiuling ; Liu, Jia ; Nielsen, Jens ; Chen, Jian ; Liu, Liming
in: Chemical Reviews (ISSN: 0009-2665), vol: 118, issue: 1, pages: 4-72, 2018

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: http://dx.doi.org/10.1021/acs.chemrev.6b00804

 

Enhanced genome editing tools for multi-gene deletion knock-out approaches using paired CRISPR sgRNAs in CHO cells

Schmieder, Valerie ; Bydlinski, Nina ; Strasser, Richard ; Baumann, Martina ; Kildegaard, Helene Faustrup ; Jadhav, Vaibhav ; Borth, Nicole
in: Biotechnology Journal (ISSN: 1860-6768), vol: 13, issue: 3, 2018

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: http://dx.doi.org/10.1002/biot.201700211

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Xylitol production by Debaryomyces hansenii and Candida guilliermondii from rapeseed straw hemicellulosic hydrolysate

López-Linares, Juan Carlos ; Romero, Inmaculada ; Cara, Cristobal ; Castro, Eulogio ; Mussatto, Solange I.
in: Bioresource Technology (ISSN: 0960-8524), vol: 247, pages: 736-743, 2018

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: http://dx.doi.org/10.1016/j.biortech.2017.09.139

 

Microaerophilic alkane degradation in Pseudomonas extremaustralis: a transcriptomic and physiological approach

Tribelli, Paula Maria ; Rossi, Leticia ; Ricardi, Martiniano M ; Gómez Lozano, María ; Molin, Søren ; Raiger Iustman, Laura J ; Lopez, Nancy I
in: Journal of Industrial Microbiology and Biotechnology (ISSN: 1367-5435), vol: 45, issue: 1, pages: 15-23, 2018

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: http://dx.doi.org/10.1007/s10295-017-1987-z

 

Baicalein reduces oxidative stress in CHO cell cultures and improves recombinant antibody productivity

Kwang Ha, Tae ; Hansen, Anders Holmgaard ; Kol, Stefan ; Kildegaard, Helene Faustrup ; Min Lee, Gyun
in: Biotechnology Journal (ISSN: 1860-6768), vol: 13, issue: 3, 2018

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: http://dx.doi.org/10.1002/biot.201700425

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Genome-wide identification of tolerance mechanisms towards p-coumaric acid in Pseudomonas putida

Calero Valdayo, Patricia Maria ; Ingemann Jensen, Sheila ; Bojanovic, Klara ; Lennen, Rebecca ; Koza, Anna ; Nielsen, Alex Toftgaard
in: Biotechnology and Bioengineering (ISSN: 0006-3592), vol: 115, issue: 3, pages: 762-774, 2018

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: http://dx.doi.org/10.1002/bit.26495

 

Serine/Threonine protein kinases from bacteria, archaea and eukarya share a common evolutionary origin deeply rooted in the tree of life

Stancik, Ivan Andreas ; Šestak, Martin Sebastijan ; Ji, Boyang ; Axelson-Fisk, Marina ; Franjevic, Damjan ; Jers, Carsten ; Domazet-Lošo, Tomislav ; Mijakovic, Ivan
in: Journal of Molecular Biology (ISSN: 0022-2836), vol: 430, issue: 1, pages: 27-32, 2018

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: http://dx.doi.org/10.1016/j.jmb.2017.11.004

 

An Adaptive Laboratory Evolution Method to Accelerate Autotrophic Metabolism

Zhang, Tian ; Tremblay, Pier-Luc
part of: Synthetic Metabolic Pathways (ISBN: 978-1-4939-7294-4), pages: 149-161, 2018, Springer,

Type: Book chapter (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: http://dx.doi.org/10.1007/978-1-4939-7295-1_10

 

Design, Engineering, and Characterization of Prokaryotic Ligand-Binding Transcriptional Activators as Biosensors in Yeast

Ambri, Francesca ; Snoek, Tim ; Skjødt, Mette Louise ; Jensen, Michael Krogh ; Keasling, Jay
part of: Synthetic Metabolic Pathways (ISBN: 978-1-4939-7294-4), pages: 269-290, 2018, Springer,

Type: Book chapter (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: http://dx.doi.org/10.1007/978-1-4939-7295-1_17

 

Assembly and Multiplex Genome Integration of Metabolic Pathways in Yeast Using CasEMBLR

Jakociunas, Tadas ; Damgaard Jensen, Emil ; Jensen, Michael Krogh ; Keasling, Jay
part of: Synthetic Metabolic Pathways (ISBN: 978-1-4939-7294-4), pages: 185-201, 2018,

Type: Book chapter (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: http://dx.doi.org/10.1007/978-1-4939-7295-1_12

 

Computational Methods to Assess the Production Potential of Bio-Based Chemicals

Campodonico Alt, Miguel Angel ; Sukumara, Sumesh ; Feist, Adam ; Herrgard, Markus
part of: Synthetic Metabolic Pathways (ISBN: 978-1-4939-7294-4), pages: 97-116, 2018,

Type: Book chapter (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: http://dx.doi.org/10.1007/978-1-4939-7295-1_7

 

A Capture-SELEX Strategy for Multiplexed Selection of RNA Aptamers Against Small Molecules

Lauridsen, Lasse Holm ; Døssing, Holger ; Long, Katherine ; Nielsen, Alex Toftgaard
part of: Synthetic Metabolic Pathways (ISBN: 978-1-4939-7294-4), pages: 291-306, 2018,

Type: Book chapter (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: http://dx.doi.org/10.1007/978-1-4939-7295-1_18

 

Multiplex Genome Editing in Escherichia coli

Ingemann Jensen, Sheila ; Nielsen, Alex Toftgaard
part of: Synthetic Metabolic Pathways (ISBN: 978-1-4939-7294-4), pages: 119-129, 2018,

Type: Book chapter (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: http://dx.doi.org/10.1007/978-1-4939-7295-1_8

 

Parts Characterization for Tunable Protein Expression

Klausen, Michael Schantz ; Sommer, Morten Otto Alexander
part of: Synthetic Metabolic Pathways (ISBN: 978-1-4939-7294-4), pages: 3-14, 2018,

Type: Book chapter (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: http://dx.doi.org/10.1007/978-1-4939-7295-1_1

 

Selection of Highly Expressed Gene Variants in Escherichia coli Using Translationally Coupled Antibiotic Selection Markers

Rennig, Maja ; Daley, Daniel O. ; Nørholm, Morten
part of: Synthetic Metabolic Pathways (ISBN: 978-1-4939-7294-4), pages: 259-268, 2018,

Type: Book chapter (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: http://dx.doi.org/10.1007/978-1-4939-7295-1_16

 

CRISPR-Cas9 Toolkit for Actinomycete Genome Editing

Tong, Yaojun ; Robertsen, Helene Lunde ; Blin, Kai ; Weber, Tilmann ; Lee, Sang Yup
part of: Synthetic Metabolic Pathways (ISBN: 978-1-4939-7294-4), pages: 163-184, 2018,

Type: Book chapter (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: http://dx.doi.org/10.1007/978-1-4939-7295-1_11

 

Bacterial Genome Editing Strategy for Control of Transcription and Protein Stability

Lauritsen, Ida ; Martinez, Virginia ; Ronda, Carlotta ; Nielsen, Alex Toftgaard ; Nørholm, Morten
part of: Synthetic Metabolic Pathways (ISBN: 978-1-4939-7294-4), pages: 27-37, 2018,

Type: Book chapter (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: http://dx.doi.org/10.1007/978-1-4939-7295-1_3

 

Synthetic Metabolic Pathways

Jensen, Michael Krogh (Editor) ; Keasling, Jay (Editor)
Publisher: Springer, (ISBN: 978-1-4939-7294-4), pages: 354

Type: Book (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: http://dx.doi.org/10.1007/978-1-4939-7295-1

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Cameo: A Python Library for Computer Aided Metabolic Engineering and Optimization of Cell Factories

Cardoso, Joao ; Jensen, Kristian ; Lieven, Christian ; Hansen, Anne Sofie Lærke ; Kutuzova, Svetlana ; Beber, Moritz Emanuel ; Özdemir, Emre ; Herrgard, Markus ; Redestig, Nils Henning ; Sonnenschein, Nikolaus
in: A C S Synthetic Biology (ISSN: 2161-5063), vol: 7, issue: 4, pages: 1163-1166, 2018

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: http://dx.doi.org/10.1021/acssynbio.7b00423